Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq203 134 2e-26 seq2 96.9 4e-15 >seq203 Length=886859 Score = 134 bits (148), Expect = 2e-26 Identities = 218/310 (70%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| ||||| ||||| ||||| | | | ||| | |||||| || |||||||| Sbjct 356986 CCAGTATTTTTTTTTAGATCAAGGAATTCAAATACATCGGCATGCCATGGCTCCAAGTAA 357045 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | || || | ||||| ||||||||||| | || | || || || || Sbjct 357046 ATGGCAAATGCCCCTGGTCTCTTGTTACCTCCCTGATCAACATAGCAGGCTGTATTGTTG 357105 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 ||||||| | |||||||| | ||||| || |||||||||| || | || | | | Sbjct 357106 AAAACTCTTAGCATTGGAACTAACCCATTTGAAATACCATTGGTACCAGCAATTTTGGTG 357165 Query 63320 CCACTGGCACGAATATT-ACTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 ||| | |||||||| || || | || ||||| || || ||||| |||| |||| Sbjct 357166 CCAGTCGCACGAATGTTGTGTACACTG--AGACCAATGCCTCCTGCTGATTTACTAATTA 357223 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 || |||| |||||| |||||| | || || || ||||| || || |||| | || | Sbjct 357224 CGGCACATCTTTTTAAAGTATCAAAAATTCCTTCGATACTGTCGTCTGTCATTGTTAGCA 357283 Query 63438 GAAAACAGCT 63447 |||||| || Sbjct 357284 AAAAACAACT 357293 Score = 104 bits (114), Expect = 3e-17 Identities = 190/276 (69%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || ||||| || || || ||| | ||| ||| | || ||||| || || ||||| Sbjct 357363 CTGGACATCTGTTGGCGTTGAGTACAGGCAGAAAAAAGCGTTGGAGACGCATGTGTAAAG 357422 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAAT 63564 | ||||| | | ||||| || || ||| || ||| | ||| | ||| || || Sbjct 357423 TAACGCTCAGACATGAAGTTGTAAGTTTCTATAACTTTGTCAAGATCTTCCTTG-TGGAT 357481 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 | || || || ||||||| ||| |||||||| | |||||| | || | || ||||| Sbjct 357482 GGCAACAGCAACTCGCATTATCATATGCTGAGGACGTTCAACTACTTTATCATTAATTTT 357541 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 || | ||| | | || ||||||||||| |||||||| ||||| |||||||| || Sbjct 357542 TAAAAGATAGCTTCTCTCTAAAGTTTTAAATCCAAAATAATTGTAACCAAAGTCTCTATC 357601 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 ||||| || | || || ||| ||||||| | ||| Sbjct 357602 ATAAATGATGGCAGAATTCAGTCTATCCTTGTGTTT 357637 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||||| ||||||||| |||||||| ||||| | | Sbjct 357809 CACTGAATACTTTCTTGGTTTCTTTGTGTAAATTTGATACTGCTATTCTGGCGGCCAATA 357868 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | |||||||| | |||| || || || || || | || |||||||| | || | Sbjct 357869 TAGCATAATCTGCGTGTTTGGTTGTCATCGTAGCAGCAGTCTCTGCTGCCAGGTTATCAA 357928 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAAC 63969 ||| || ||||| || ||| ||| | || | |||||| Sbjct 357929 GTTCCACTGTTGTGACTCCAGAATAAAGCCCATTGATAAC 357968 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 61964 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62023 || || || || || | ||||||| ||||| || || ||||| ||||| ||||||||| Sbjct 355514 GCCATGTGTATGTTGAGAGATTGAGACTGATCAATAAAAGCTCCTCTGTCCGCAGCCATT 355573 Query 62024 TTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62064 |||| ||| |||||||| | ||||||||||| |||||| || Sbjct 355574 TTTAAAATTGTCTTTTGAGAAATTTCCCAAACAGTTTTGTA 355614 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 62159 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62218 || |||| | || | | |||||| |||||||| | || ||||| || || | ||| | Sbjct 355772 TCAGTTAGATCTTTCAAGAGATGAGGATTAACAATCTGGAATTCCCCGGAAAGTACGCGT 355831 Query 62219 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 62278 | ||| |||||||| ||||| ||||| || ||||||||||| || | |||||| || Sbjct 355832 CTTTGGTAGATATTACTCGTATATGGTTCAACTGACTCATTATTGCCAAGAATTTGGGCC 355891 Query 62279 GTTGATGCAGTCGGCATAGGTGC 62301 || ||||| || ||||| || || Sbjct 355892 GTCGATGCTGTTGGCATCGGAGC 355914 >seq2 Length=6207162 Score = 96.9 bits (106), Expect = 4e-15 Identities = 209/313 (67%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 |||| ||| | | ||||| ||| | |||||| | |||||||| |||||||| |||| Sbjct 5338607 TATTTTTTCTCATGTCGAGAAACTGGAAAATATCGGCGTGCCACGGCTCCAAGTAGATGG 5338666 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | | | || | || |||||| | || ||||| || | | || ||| |||| ||| Sbjct 5338667 CGAACGCACCTGATCGCTTGTTTTCACCTTGATCGGTGAAACAGGCTGTGCTATTGAAAA 5338726 Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCAC 63323 ||||| ||| ||| | ||||| || ||||| || || || | || | || Sbjct 5338727 TTCTCAGCATGGGAGCTAACCCATTTGACGTACCGTTAGTGCCGCAAATTCTTGTGCCCG 5338786 Query 63324 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63383 || |||||| || | ||| || ||| | |||| ||| ||||| || | Sbjct 5338787 AGGAACGAATGTTGTGCACACTTAGGCCGATTTCTCCTGATGATTTGCTGATTACGGCAC 5338846 Query 63384 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 63443 ||| ||| |||||||| | || || || ||||| || ||| |||| | |||||||||| Sbjct 5338847 ATCTTTTCAACGTATCGAAAATTCCTTCGATACTGTCGTCCGTCATCGTGAGTAGAAAAC 5338906 Query 63444 AGCTAGACATTTG 63456 | || || |||| Sbjct 5338907 AACTGGAAGTTTG 5338919 Score = 96.9 bits (106), Expect = 4e-15 Identities = 209/313 (67%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 |||| ||| | | ||||| ||| | |||||| | |||||||| |||||||| |||| Sbjct 5349906 TATTTTTTCTCATGTCGAGAAACTGGAAAATATCGGCGTGCCACGGCTCCAAGTAGATGG 5349965 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | | | || | || |||||| | || ||||| || | | || ||| |||| ||| Sbjct 5349966 CGAACGCACCTGATCGCTTGTTTTCACCTTGATCGGTGAAACAGGCTGTGCTATTGAAAA 5350025 Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCAC 63323 ||||| ||| ||| | ||||| || ||||| || || || | || | || Sbjct 5350026 TTCTCAGCATGGGAGCTAACCCATTTGACGTACCGTTAGTGCCGCAAATTCTTGTGCCCG 5350085 Query 63324 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63383 || |||||| || | ||| || ||| | |||| ||| ||||| || | Sbjct 5350086 AGGAACGAATGTTGTGCACACTTAGGCCGATTTCTCCTGATGATTTGCTGATTACGGCAC 5350145 Query 63384 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 63443 ||| ||| |||||||| | || || || ||||| || ||| |||| | |||||||||| Sbjct 5350146 ATCTTTTCAACGTATCGAAAATTCCTTCGATACTGTCGTCCGTCATCGTGAGTAGAAAAC 5350205 Query 63444 AGCTAGACATTTG 63456 | || || |||| Sbjct 5350206 AACTGGAAGTTTG 5350218 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 63569 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63628 || || || | ||| | ||||||||| || | |||| | | |||||| || ||||||||| Sbjct 5339095 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5339154 Query 63629 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63688 ||||| | | |||||||| || || |||| || ||||| ||||||| || ||| Sbjct 5339155 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5339214 Query 63689 ATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC 63732 | ||| | || || || ||||| || | | | | || || ||| Sbjct 5339215 TTGATAGCAGAATTCAGCTTATCTTTGTGTCTTTGAATTATATC 5339258 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 63569 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63628 || || || | ||| | ||||||||| || | |||| | | |||||| || ||||||||| Sbjct 5350394 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5350453 Query 63629 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63688 ||||| | | |||||||| || || |||| || ||||| ||||||| || ||| Sbjct 5350454 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5350513 Query 63689 ATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC 63732 | ||| | || || || ||||| || | | | | || || ||| Sbjct 5350514 TTGATAGCAGAATTCAGCTTATCTTTGTGTCTTTGAATTATATC 5350557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633588873422000