Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4393 136 3e-27 seq26 129 5e-25 seq434 122 8e-23 seq350 109 5e-19 seq30 82.4 7e-11 >seq4393 Length=1805 Score = 136 bits (150), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| ||| | || || ||| |||||||| | ||||| ||| | ||| Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| ||||||||| || |||||||| || || || || || Sbjct 854 GACACAATTGAAAATGTCA---AAGCAAAAATCCAG-GACAAAGAGGGTATCCCTCCAGA 799 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | |||||||| ||||| ||| | ||||||| || || || || || Sbjct 798 TCAGCAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTA 739 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||||||||| || || |||||| | || || | || ||||||| Sbjct 738 CAACATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGG 688 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || ||| |||||||| | ||||| ||| | ||| Sbjct 1370 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 1311 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| | || |||| ||| || |||||||| ||||| ||||| Sbjct 1310 GATACAATTGAAAACGTCA---AGGCCAAAATTCAA-GATAAAGAAGGTATTCCTCCTGA 1255 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | ||||||||||| || || | ||||| | ||||| | || || Sbjct 1254 TCAACAGAGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACTA 1195 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| |||||||| || ||||| || ||||| || | | || ||||||| Sbjct 1194 CAACATTCAAAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGG 1144 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || |||||| | ||||| | ||||| ||| | || Sbjct 1142 ATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTCC 1083 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| ||| || |||||||| || || || || Sbjct 1082 GACACGATTGAG--AATGTCAAAGCTAAAATTCAG-GATAAAGAAGGTATCCCTCCCGAT 1026 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| || || ||||| | ||||||| || || | || || Sbjct 1025 CAGCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTAT 966 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || || || ||| | || || Sbjct 965 AACATTCAAAAAGAGTCTACACTCCATCTTGTACT 931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| | || || ||| | || || | ||||| ||| | || Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| | || |||| ||| ||||||||||| || || || || Sbjct 398 GATACGATTGAAAACGTCA---AGGCTAAAATTCAA-GACAAAGAAGGCATACCTCCAGA 343 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | |||||||| ||||| ||| | ||||||| || || || || || Sbjct 342 TCAGCAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTA 283 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| ||||| || || || |||||||| | | || ||||||| Sbjct 282 CAACATTCAGAAAGAGTCAACTCTCCATTTAGTTTTGCGTCTTCGAGGAGG 232 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| | || || | ||||| || | || Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| ||||||||| || |||||||| || || || || || Sbjct 1538 GACACGATTGAAAATGTCA---AAGCAAAAATCCAA-GACAAAGAGGGTATCCCTCCAGA 1483 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | ||||| || || ||||| | ||||||| || || | || || Sbjct 1482 TCAGCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTA 1423 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||||||| || || ||| | ||||| Sbjct 1422 TAATATTCAAAAAGAATCTACACTCCATCTTGTGCT 1387 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || ||| |||||||| | || || || | || Sbjct 686 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAAACCATCACACTTGAGGTTGAAGCTTCC 627 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | |||| ||| ||||||||||| || ||||| || || Sbjct 626 GATACAATTGAAAATGTGAAGGCCAAAATTCAA-GACAAAGAAGGTATCCCACCAGATCA 568 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || || || || | || |||| || ||| || ||||| || Sbjct 567 GCAGCGTTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACTCTGTCTGATTATAA 508 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || ||| | || || Sbjct 507 CATTCAGAAGGAGTCTACTCTGCATCTTGTACT 475 >seq26 Length=4002310 Score = 129 bits (142), Expect = 5e-25 Identities = 171/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || ||||| |||||| |||| || | || || || | || Sbjct 1458180 AATGCAAATTTTTGTTAAAACATTGACTGGTAAAACCATTACCTTGGAGGTCGAAGCTTC 1458121 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| | ||| |||||| || || ||||| ||||| |||||||| Sbjct 1458120 AGATACCATCGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGTATTCCCCCTGACCA 1458061 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || |||||| | ||||||| | | || || || ||||| Sbjct 1458060 GCAGCGTCTCATCTTTGCTGGAAAACAACTCGAAGATGGTAGAACCTTGTCAGACTACAA 1458001 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG-AAATTAT 25232 ||| || ||||||||||| |||||| | || || | || | ||||| || |||| Sbjct 1458000 TATCCAGAAAGAATCCACACTACATCTTGTTCTTCGTCTTCGTGGAGGCAACTTAT 1457945 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||| || || || |||| || | || || ||| | ||| Sbjct 1472365 ATGCAGATCTTCGTTAAAACTTTAACTGGCAAGACCATTACTTTAGAGGTCGAGGCATCT 1472306 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| | || | ||| ||||||||||| || || || ||||| Sbjct 1472305 GATACCATTGAGAATGTCAAGGCCAAGATTCAA-GACAAAGAAGGCATCCCCCCAGACCA 1472247 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| ||||| || |||||||| | | || | || ||||| Sbjct 1472246 GCAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAAGACGGAAGGACACTTTCTGACTACAA 1472187 Query 25178 TATTCAAAAAGAATCCACGCTACATTT 25204 ||||| || |||||||| || || || Sbjct 1472186 CATTCAGAAGGAATCCACCCTTCACTT 1472160 >seq434 Length=1254451 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || | ||||| | || ||||| | || Sbjct 844084 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCC 844025 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| | || |||| ||| ||||||||||| || || || || Sbjct 844024 GATACAATTGAAAACGTCA---AGGCTAAAATTCAA-GACAAAGAAGGTATCCCTCCAGA 843969 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | |||||||| ||||| || | ||||||| |||||| | || || Sbjct 843968 CCAACAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTA 843909 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||| ||||| || |||||||| || | || |||| || Sbjct 843908 CAATATTCAAAAAGAGTCCACACTTCATTTAGTTTTACGACTTCGAGGTGG 843858 >seq350 Length=778331 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||| || | || |||||| | ||||| | || || ||| | ||| Sbjct 635061 ATGCAGATTTTCGTAAAAACCCTCACGGGTAAAACGATCACCCTTGAGGTTGAGGCTTCT 635120 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| |||| || | || ||||||||||| |||||||| || Sbjct 635121 GATACCATCGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAAGGCATTCCACCCGA 635176 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || || |||||||| | || |||| |||||| | |||||| Sbjct 635177 CCAGCAGAGGTTGATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTA 635236 Query 25175 CAATATTCAAAAAG 25188 |||||| ||||||| Sbjct 635237 CAATATCCAAAAAG 635250 >seq30 Length=3281913 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || |||| ||||| | ||||| | || || || | || Sbjct 593909 ATGCAAATTTTCGTGAAAACCCTGACGGGTAAGACTATCACCTTGGAGGTCGAAGCCTCG 593850 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || || ||||| || || || || || ||||| Sbjct 593849 GACACAATTGAGAACGTGAAGGCCAAGATACAGGACAAGGAGGGCATACCTCCGGACCAG 593790 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| ||||||||||| | ||||||| |||||| | ||| ||||| Sbjct 593789 CAAAGGTTGATTTTCGCCGGCAAACAGCTCGAAGATGGCCGCACTCTTTCCGACTACAAC 593730 Query 25179 ATTCAAAAAG 25188 || || |||| Sbjct 593729 ATCCAGAAAG 593720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433299243947675