Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq30 131 2e-25 seq474 113 5e-20 seq2708 98.7 1e-15 >seq30 Length=3281913 Score = 131 bits (144), Expect = 2e-25 Identities = 170/234 (73%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 93111 AACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTT 93170 ||||| | || || || || | || || ||||| || | ||| || | |||||||| | Sbjct 991672 AACCT-CATCGCGAGAGATGAGTTCGTTACTGAAGGTAAGACCCGGCATGAGTCCTCGCT 991614 Query 93171 TCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAA 93230 | || |||||||| || | |||||||| ||| ||||| |||||||| || || || | Sbjct 991613 TTTTCAGCCAAAAAATAGCTGCAAAACTGCCACTGAAAAAGATACCTTCGACTGCAGCGA 991554 Query 93231 ATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290 | || | || |||||||||||| | ||| | | |||| ||||| || | |||||| | Sbjct 991553 AAGCAATAACACGTTCGGCAAATGTAGCGCTCTCATTGCTAATCCAGTTGAGAGCCCAGT 991494 Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||||| ||| ||| || || || || || || ||||||| | | |||| Sbjct 991493 TGGCTTTTTTAGTAACACATGGCAGAGTCTCAATGGCATTAAATAAGAACTCTC 991440 Score = 114 bits (126), Expect = 1e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || || || | | ||| ||||| || ||||||| || || || ||||||||||| Sbjct 991344 GTAAGTGTCAATGAGAATAGAGTACATCTCTGAATGGATGTTTTCTATGGCAATTTGGAA 991285 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 || ||||| || | ||| || || | || ||||||||| || || || || | ||| Sbjct 991284 ACCATAGAAGCAACGAGCCTCTGTAACTTGTACTTCTTGACTGAACCTTTCCACTAAATT 991225 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 |||||||| || ||||| || || || ||||| ||||||| ||| || || ||||| Sbjct 991224 CTCATTGACAATGCCATCTGAGGCAGCGAAAAATGCCAATACGTGCGAGATGAAGTGTTT 991165 Query 93544 CTCATC 93549 |||||| Sbjct 991164 CTCATC 991159 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 ||||||||||| ||||| || || ||||| || || ||||| |||||||||||||| | | Sbjct 991051 TTTGAAAGATCCACTTCCTCTACTGTCCAGAATGAAGCTTCCGCTTTTTTGTACATCTGC 990992 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || |||||| | |||||||||| || |||||||| Sbjct 990991 CAGATGTCTGGCCATTGAATTGGGAAAATGACAAA 990957 >seq474 Length=1093548 Score = 113 bits (124), Expect = 5e-20 Identities = 81/91 (89%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 513730 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 513671 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||| | || || Sbjct 513670 GTTCGAACCCCACACTTAGCAAACTTTTTTT 513640 >seq2708 Length=3781 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/97 (84%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||||||||||||||| || ||||| || ||||| ||||||| Sbjct 2198 AGTCAGGTTGGCCGAGTGGTCTAAGGCGTTGGACTTAAGTTCCAATTCCCATACGGGAGC 2139 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA--TTATTATT 126357 |||||||||||||||||||||| || | || ||||| Sbjct 2138 GTGGGTTCGAACCCCACACCTGGCATAGCTTTTTATT 2102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556822898661800