Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq4393 84.2 2e-11 seq434 84.2 2e-11 >seq4393 Length=1805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || ||||||||||| || ||||| || || Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| |||||||| || | || ||||| Sbjct 854 GACACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATCAG 795 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| ||||| ||| | |||||| || || | || || || Sbjct 794 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 735 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || |||||||| ||||| |||||| | || || ||||| || || |||| Sbjct 734 ATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGGCA 686 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || ||||| ||||| | ||| ||| || Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| |||||||| || | || ||||| Sbjct 1538 GACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 1479 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATA 111364 || | | |||| || || ||||| | |||||| | | ||| | | || |||| Sbjct 1478 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTT--CAGACTATA 1421 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 |||| ||||||||||||||||| ||| | ||| | || || || ||||||| Sbjct 1420 ATATTCAAAAAGAATCTACACTCCATCTTGTGCTTCGACTTCGTGGTGGCA 1370 >seq434 Length=1254451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || |||||||| || | || || || || || ||| | || |||| | | Sbjct 844084 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCC 844025 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || |||||| ||||||||||| | || || ||| Sbjct 844024 GATACAATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGACCAA 843965 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 ||| | || |||| ||| ||||| || | |||||| || | ||| | | || || | Sbjct 843964 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACACTTT--CAGACTACA 843907 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAAT 111417 |||| |||||||| || ||||| |||||||| || || || || ||||| |||| Sbjct 843906 ATATTCAAAAAGAGTCCACACTTCATTTAGTTTTACGACTTCGAGGTGGTCAAT 843853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423011926669000