Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq434 141 8e-29 seq4393 140 3e-28 seq26 131 1e-25 seq350 127 2e-24 seq30 93.3 4e-14 >seq434 Length=1254451 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || ||| |||| | || |||||| | || Sbjct 844084 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCC 844025 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| |||||||||||||| || ||||| || || || ||| Sbjct 844024 GATACAATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGACCAA 843965 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| ||||| ||| | || ||| ||||| | || || ||||| Sbjct 843964 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTACAAT 843905 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| ||||| | ||||||||||| ||| | || || ||| Sbjct 843904 ATTCAAAAAGAGTCCACACTTCATTTAGTTTTACGACTTCGAGGTGGT 843857 >seq4393 Length=1805 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || || ||||| |||| || ||||| || || | Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| |||||| || ||||| |||||||| || || ||||| Sbjct 854 GACACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATCAG 795 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| ||||| || | || ||| || || | || || |||||| Sbjct 794 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 735 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||| ||||| | || || || | || ||||| Sbjct 734 ATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGG 688 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||||||| | || |||||||| ||||||| ||||| || || || Sbjct 1142 ATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTCC 1083 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| |||||||| || || || ||||| || |||||||| Sbjct 1082 GACACGATTGAGAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCTCCCGATCAG 1023 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || |||||| | || ||| || || | || || || ||| Sbjct 1022 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAC 963 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || | ||| | || | ||| | || || ||| Sbjct 962 ATTCAAAAAGAGTCTACACTCCATCTTGTACTCCGACTTCGTGGTGGT 915 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||||||| |||| || ||||| | || || ||||| || || | Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| |||||||||||||| || || || || || ||||| Sbjct 398 GATACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCAG 339 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| ||||| || | || ||| || || | || || |||||| Sbjct 338 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 279 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| || || | |||||||||||||| | || ||||| Sbjct 278 ATTCAGAAAGAGTCAACTCTCCATTTAGTTTTGCGTCTTCGAGGAGG 232 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| ||| | || || ||||| |||| || ||||| || || | Sbjct 1370 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 1311 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| ||||||||||| || || |||||||| || |||||| Sbjct 1310 GATACAATTGAAAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 1251 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| || ||| | || || ||||| | || || |||||| Sbjct 1250 CAGAGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACTACAAC 1191 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || |||||| | ||||| || ||||| | || ||||| Sbjct 1190 ATTCAAAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGG 1144 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| |||| || ||||| | || || ||||| ||| || | Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| |||||| |||||||| |||||||| || || ||||| Sbjct 1538 GACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 1479 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || |||||| | || ||| || || | || || || || Sbjct 1478 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAT 1419 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||||||||| || Sbjct 1418 ATTCAAAAAGAATCTAC 1402 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | ||||||||||| | || | ||||| || | | Sbjct 230 ATGCAAATTTTTGTAAAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTCT 171 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||||| || || || || || ||||| || || ||| Sbjct 170 GACACAATTGAAAACGTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCAA 111 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| ||||| ||| | || ||| ||| || | ||||| || ||| Sbjct 110 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTATAAC 51 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || |||||| | ||||| || ||||| | || ||||| Sbjct 50 ATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGG 4 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || ||| |||| | || |||||| | ||||||| | || | |||| Sbjct 1802 ACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCCGATACAATTGAAAACGTCAAGGCT 1743 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||||||||| || ||||| || || ||||| || ||| | || || || ||||| Sbjct 1742 AAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAGCAGCGTTTGATTTTCGCTGGCAAG 1683 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || ||| ||| || | ||||| |||||||||||||| || || ||| | ||| Sbjct 1682 CAGCTTGAAGATGGCCGTACACTGTCCGACTACAACATTCAAAAGGAGTCTACCCTTCAT 1623 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| | || ||||| Sbjct 1622 TTGGTCTTGCGTCTCCGAGGAGG 1600 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || ||||| |||| ||||| || ||| | || Sbjct 686 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAAACCATCACACTTGAGGTTGAAGCTTCC 627 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || |||||||||||||| || ||||| ||||| ||||| Sbjct 626 GATACAATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 567 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||| | |||||| || || | || ||||| ||| Sbjct 566 CAGCGTTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACTCTGTCTGATTATAAC 507 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | ||| | || | ||| | || || ||| Sbjct 506 ATTCAGAAGGAGTCTACTCTGCATCTTGTACTCCGACTTCGTGGTGGT 459 >seq26 Length=4002310 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| || || |||||||| | || | || || ||| | | Sbjct 1458179 ATGCAAATTTTTGTTAAAACATTGACTGGTAAAACCATTACCTTGGAGGTCGAAGCTTCA 1458120 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| ||||| ||||| ||||| |||||||| || || || Sbjct 1458119 GATACCATCGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGTATTCCCCCTGACCAG 1458060 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || ||||| | || ||| | ||| | || || ||||| Sbjct 1458059 CAGCGTCTCATCTTTGCTGGAAAACAACTCGAAGATGGTAGAACCTTGTCAGACTACAAT 1458000 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||||||||| ||||| | ||| | || | || ||||| Sbjct 1457999 ATCCAGAAAGAATCCACACTACATCTTGTTCTTCGTCTTCGTGGAGG 1457953 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || |||||||||||||| || || || | ||| | || || || | | Sbjct 1472365 ATGCAGATCTTCGTTAAAACTTTAACTGGCAAGACCATTACTTTAGAGGTCGAGGCATCT 1472306 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || ||||||||||| || || || || || || || Sbjct 1472305 GATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAAGGCATCCCCCCAGACCAG 1472246 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| |||||||| || | || | || || |||||| Sbjct 1472245 CAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAAGACGGAAGGACACTTTCTGACTACAAC 1472186 Query 22399 ATTCAAAAAGAATCCACCATACATTT 22424 ||||| || ||||||||| | || || Sbjct 1472185 ATTCAGAAGGAATCCACCCTTCACTT 1472160 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 ||||||||||||||| ||||| ||||| || || || || ||||| || ||||| ||||| Sbjct 1458552 AAAAATTCAAGACAAAGAGGGCATTCCTCCAGACCAGCAGCGTCTCATCTTTGCTGGCAA 1458493 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 |||||||| ||| | || | || |||||||||||||| || ||||| || | || Sbjct 1458492 GCAGTTAGAAGATGGAAGGACGCTTTCTGATTACAACATTCAGAAGGAATCAACACTCCA 1458433 Query 22422 TTTAGTTTTGCGATTGCGCGGAGG 22445 | ||| |||| | || ||||| Sbjct 1458432 CCTGGTTCTGCGTCTTCGTGGAGG 1458409 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || || || || |||| || || || || | || Sbjct 1458407 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTAGAGGTCGAGGCATCC 1458348 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| ||||| || || || |||||||| || || || || Sbjct 1458347 GACACTATTGAGAACGTCAAAGCTAAAATCCAGGATAAAGAGGGTATCCCTCCGGACCAG 1458288 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || |||||| | ||||| | | || | || || |||||| Sbjct 1458287 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAGGACGGCAGAACTCTTTCTGACTACAAC 1458228 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| || | ||| | ||| |||| |||| || || Sbjct 1458227 ATTCAGAAGGAATCTACTCTTCATCTGGTTCTGCGTCTGCGTGGTGG 1458181 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || || || |||| | ||||| ||| | || Sbjct 1471298 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAGACCATCACATTGGAAGTCGAAGCTTCC 1471239 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || ||||||||||| || || ||||| || || || Sbjct 1471238 GATACCATCGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGCATTCCCCCAGACCAG 1471179 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || ||||| || Sbjct 1471178 CAGCGTCTCATCTTTGCTGG 1471159 >seq350 Length=778331 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || ||||||||| |||| ||||| || || | Sbjct 635058 AAGATGCAGATTTTCGTAAAAACCCTCACGGGTAAAACGATCACCCTTGAGGTTGAGGCT 635117 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || ||||| || || || ||||| || || ||||||||||| Sbjct 635118 TCTGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCCGAC 635177 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | | || || || ||||||||| | |||||| |||||| | ||||||||| Sbjct 635178 CAGCAGAGGTTGATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTAC 635237 Query 22396 AACATTCAAAAAG 22408 || || ||||||| Sbjct 635238 AATATCCAAAAAG 635250 >seq30 Length=3281913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || ||||| | || ||||| || |||| | || || ||| || | Sbjct 593910 GATGCAAATTTTCGTGAAAACCCTGACGGGTAAGACTATCACCTTGGAGGTCGAAGCCTC 593851 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | | || || || || ||||||||||| || || || || || Sbjct 593850 GGACACAATTGAGAACGTGAAGGCCAAGATACAGGACAAGGAGGGCATACCTCCGGACCA 593791 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | | || || |||||||||||| | || ||| |||||| | ||||| ||||| Sbjct 593790 GCAAAGGTTGATTTTCGCCGGCAAACAGCTCGAAGATGGCCGCACTCTTTCCGACTACAA 593731 Query 22398 CATTCAAAAAG 22408 ||| || |||| Sbjct 593730 CATCCAGAAAG 593720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419700146456425