Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 123 5e-23 seq203 89.7 1e-12 >seq2 Length=6207162 Score = 123 bits (136), Expect = 5e-23 Identities = 238/346 (69%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 244694 TTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTG 244753 ||||| || ||||| || |||| || ||| || || ||||| || || | ||| ||| Sbjct 5338148 TTGCACACTGCCACTTCATCCGGTGAGGAGTATTGTACGATCTCAGTACACAAGTTGCTG 5338207 Query 244754 CACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGC 244813 | ||||||||||||||| | ||| ||||| ||||| |||||| ||||||||| ||| Sbjct 5338208 CTCTTGATGGTGCCCAGATTCTGCTGATTTGACTTTCGATTGCAGTGGTCCTTGTAAAGC 5338267 Query 244814 ATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGC 244872 ||| | ||| || || || | ||| | |||| ||| | |||| || | ||| || Sbjct 5338268 ATGTACGGCATTCCAGTTTCCACCTGAGAATTCAGGATCGCCG-TCCACAGCTTCCTGGC 5338326 Query 244873 CTTGACCGTCCTGCGAG-CCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 | || | || | | ||||| || |||||| ||||| ||||| | Sbjct 5338327 GTCGA-TTTGCTTCTTGAATTTGCCGTCACTCTCGTACTTTTCGTACAATCGGTCGAAAT 5338385 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGC 244991 || |||||||| || | | ||||| ||| |||||||||||| ||||||| || Sbjct 5338386 CGTTTCCCCAGACATCATGCAATCCGGGACACTGTTGCGGGCACATGAGGCTCCACTTGC 5338445 Query 244992 CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGC 245037 || |||| ||||||| |||||| | || |||||||| || || Sbjct 5338446 CGTTGTCCAAAACCCTCTTCATGAACAAATCTGGGATCCAAAGAGC 5338491 Score = 123 bits (136), Expect = 5e-23 Identities = 238/346 (69%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 244694 TTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTG 244753 ||||| || ||||| || |||| || ||| || || ||||| || || | ||| ||| Sbjct 5349447 TTGCACACTGCCACTTCATCCGGTGAGGAGTATTGTACGATCTCAGTACACAAGTTGCTG 5349506 Query 244754 CACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGC 244813 | ||||||||||||||| | ||| ||||| ||||| |||||| ||||||||| ||| Sbjct 5349507 CTCTTGATGGTGCCCAGATTCTGCTGATTCGACTTTCGATTGCAGTGGTCCTTGTAAAGC 5349566 Query 244814 ATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGC 244872 ||| | ||| || || || | ||| | |||| ||| | |||| || | ||| || Sbjct 5349567 ATGTACGGCATTCCAGTTTCCACCTGAGACTTCAGGATCGCCG-TCCACAGCTTCCTGGC 5349625 Query 244873 CTTGACCGTCCTGCGAG-CCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 | || | || | | ||||| || |||||| ||||| ||||| | Sbjct 5349626 GTCGA-TTTGCTTCTTGAATTTGCCGTCACTCTCGTACTTTTCGTACAATCGGTCGAAAT 5349684 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGC 244991 || |||||||| || | | ||||| ||| |||||||||||| ||||||| || Sbjct 5349685 CGTTTCCCCAGACATCATGCAATCCGGGACACTGTTGCGGGCACATGAGGCTCCACTTGC 5349744 Query 244992 CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGC 245037 || |||| ||||||| |||||| | || |||||||| || || Sbjct 5349745 CGTTGTCCAAAACCCTCTTCATGAACAAATCTGGGATCCAAAGAGC 5349790 >seq203 Length=886859 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 244694 TTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTG 244753 ||||| || || || || |||| || |||||| || |||||||| || | ||||||| Sbjct 356543 TTGCAAACTGCTACTTCATCCGGTGAGGAGTACTGCACTATCTCGGTACACAAGTTACTG 356602 Query 244754 CACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGC 244813 | ||||||||||||| | || ||||| |||||| ||||||| ||| ||||| ||| Sbjct 356603 CTTCTGATGGTGCCCAGATTTTGCTGATTCGACTTGCGGTTGCAGTGGTCTTTGTAAAGC 356662 Query 244814 AT 244815 || Sbjct 356663 AT 356664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944274925913200