Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq887 104 2e-17 seq4393 93.3 3e-14 seq1121 93.3 3e-14 >seq887 Length=28448 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 12221 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 12280 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| | ||||||||||| ||| || ||||| Sbjct 12281 CCATAACTGATTAAATGAGCCATTCGCGGTTTCAACTTAA 12320 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 12221 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 12280 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| | ||||||||||| ||| || ||||| Sbjct 12281 CCATAACTGATTAAATGAGCCATTCGCGGTTTCAACTTAA 12320 >seq4393 Length=1805 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| || |||| || | ||| || || ||| |||||||||||||| || | | Sbjct 232 CCTCCTCGAAGACGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGAC 291 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || || | ||||||||| ||||| |||| || |||||||| || Sbjct 292 AATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGT 351 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCA 34079 | || |||||||| |||||| ||| | | ||| | |||| | | ||| Sbjct 352 ATGCCTTCTTTGTCTTGAATTTTAGCCTTGA-CGTTTTCAATCGTATCTGAGGCCTCGAC 410 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||||||||||| || ||||| ||||| || ||||| ||||| Sbjct 411 TTCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCAT 458 >seq1121 Length=25326 Score = 93.3 bits (102), Expect = 3e-14 Identities = 81/98 (83%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| |||| ||||||||||| Sbjct 13937 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAAAGTACAGTCTAAGGAACC 13878 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||||||| || ||||||||||| ||| || ||||| Sbjct 13877 GTAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 13840 Score = 93.3 bits (102), Expect = 3e-14 Identities = 81/98 (83%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| |||| ||||||||||| Sbjct 13937 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAAAGTACAGTCTAAGGAACC 13878 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||||||| || ||||||||||| ||| || ||||| Sbjct 13877 GTAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 13840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397036050566890