Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq434 132 1e-25 seq4393 129 1e-24 seq26 125 2e-23 seq350 113 1e-19 >seq434 Length=1254451 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || |||| | || | ||||| ||| |||||||| ||||| ||||| Sbjct 843855 TGACCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCT 843914 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| || ||||| | || || || || || ||||| || ||||| ||| Sbjct 843915 GAAAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGG---TCT 843971 Query 288364 GG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || ||| |||||||| || || ||||| || || |||||||| || | |||| | | Sbjct 843972 GGAGGGATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCT 844031 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||||||||| || || ||||||||||| || |||||||| Sbjct 844032 TCCACCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | | || | ||||| ||| || || || || ||||||| Sbjct 844082 CATG-CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGT 844140 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || || ||||| | || || || ||||| |||| ||| || ||| | Sbjct 844141 CGGACAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGA---T 844197 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| ||| || ||||| || |||||||| ||||| || ||||| || | || | Sbjct 844198 CTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAG 844257 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || | ||||||||||| || || || |||||||| || |||||||| Sbjct 844258 CTTCCACCTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 844312 >seq4393 Length=1805 Score = 129 bits (142), Expect = 1e-24 Identities = 171/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || |||| ||| || ||||| | || ||||||||| |||||||||| Sbjct 1368 CATG-CCACCACGAAGTCGAAGCACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGT 1426 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || || ||||| | ||||| || ||||| |||| |||||| || || Sbjct 1427 CTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTG---AT 1483 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| || ||||| || |||||||| ||||| || ||||| || | || | Sbjct 1484 CTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCTGAGG 1543 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| ||||| || || || || || || || || || || || ||||| Sbjct 1544 CTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAACAAAAATTTGCAT 1598 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| ||||| ||||| | || |||||||| || |||||||| | Sbjct 916 CCACCACGAAGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAA 975 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||| || ||||| |||| |||||| ||| ||| Sbjct 976 AGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGG 1035 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||||||||| ||||| ||||| || || || || | ||| | || ||| Sbjct 1036 ATACCTTCTTTATCCTGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACT 1095 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || ||||| || || || || ||||| Sbjct 1096 TCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| ||||| ||||| | || || || || || ||||| || | Sbjct 460 CCACCACGAAGTCGGAGTACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGAC 519 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || ||||| |||| |||||| ||| |||| Sbjct 520 AGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGG 579 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || || ||||| || ||||| ||||| || | |||| | ||| || Sbjct 580 ATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCAACC 639 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || ||||||||||| || |||||||| Sbjct 640 TCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 686 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | | || | ||||| ||| || ||||| || || |||| Sbjct 1140 CATG-CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGT 1198 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| |||||||| | || ||||| || || |||| | ||||||| | Sbjct 1199 CCGATAGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAG 1258 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||||||||| || ||||| || || |||||||| || | ||| | | Sbjct 1259 GAGGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCT 1318 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || ||||| || || || || |||||||| || || |||||||| Sbjct 1319 CAACTTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 102 bits (112), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 288264 TACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTC 288323 ||||||||| | || |||||||| || || ||||| | | || ||||| ||||| Sbjct 705 TACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCATCTTC 764 Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATC 288380 | ||| || || || || |||| ||| || ||| ||||| ||| || ||||| || Sbjct 765 GAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGA---TCTGGAGGGATACCCTCTTTGTC 821 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 ||||||||| ||||| || ||||| || | || | || ||||| || ||||| || Sbjct 822 CTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATGGT 881 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || || || ||||| Sbjct 882 TTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | | || | ||||| ||| || || || || |||||||||| Sbjct 4 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 63 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || || || || || ||||| || ||||| ||||| Sbjct 64 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGG---TCTGGA 120 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||||||||||||||| || || |||||||| || | || | || Sbjct 121 GGAATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCG 180 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || ||||| ||||| || || || || ||||| Sbjct 181 ACTTCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 Score = 96.9 bits (106), Expect = 8e-15 Identities = 126/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||||| || || || || ||||| | || || || ||||| Sbjct 1636 TCCTTTTGAATGTTGTAGTCGGACAGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAA 1695 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| ||||| ||| |||||||| || || ||||| || || ||| Sbjct 1696 ATCAAACGCTGCTGA---TCTGGAGGGATACCTTCTTTGTCTTGAATTTTAGCCTTGACG 1752 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| || | |||| | ||| || || | ||||||||||| || || || Sbjct 1753 TTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCGTCTTTCCAGTGAG 1805 >seq26 Length=4002310 Score = 125 bits (138), Expect = 2e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || ||||||| || ||| || || || || ||||| | Sbjct 1458180 TCCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGA 1458239 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||||| || | ||||| || ||||| |||| |||||| || || Sbjct 1458240 AAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGG 1458299 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || ||||||||||||||||| ||||| ||||| || |||| ||| | || || Sbjct 1458300 GATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGAC 1458359 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| || |||| |||||||| || ||||||||| Sbjct 1458360 CTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 1458408 Score = 91.5 bits (100), Expect = 3e-13 Identities = 147/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| || || || || ||||| | || || | |||||||||||| || Sbjct 1472163 TGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAACTGC 1472222 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387 || || || ||||| |||||||| || ||| ||||| |||||||| || || || Sbjct 1472223 TTGCCAGCAAAGATGAGACGCTGCTG---GTCTGGGGGGATGCCTTCTTTGTCTTGAATC 1472279 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || || || || | ||| | || || || | || || ||||| || Sbjct 1472280 TTGGCCTTGACATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCA 1472339 Query 288448 GTCAGAGTCTTGACGAATATCTGCATTATG 288477 || | ||| || ||||| |||||||| ||| Sbjct 1472340 GTTAAAGTTTTAACGAAGATCTGCATGATG 1472369 Score = 87.8 bits (96), Expect = 4e-12 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || |||||||| || | || || | ||||||||| | ||| ||||||||||| Sbjct 1471335 TTCTTTCTGAATATTATAATCTGAAAGGGTTCTTCCGTCTTCCAGTTGCTTTCCTGCGAA 1471394 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || ||||| || || ||| || || || ||||| || || ||||| ||||| || Sbjct 1471395 AATGAGACGTTGCTG---GTCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTAC 1471451 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 |||||| || | ||| | ||| || || | || || ||||| || Sbjct 1471452 GTTTTCAATTGTATCTGATGCTTCAACCTCTAAGGTAATTGTCTTTCC 1471499 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| |||||||| || |||||| || |||||||| || || || || Sbjct 1471159 CCAGCAAAGATGAGACGCTGCTGG---TCTGGGGGAATGCCTTCTTTGTCTTGAATCTTG 1471215 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || ||||| || | |||| | ||| ||||| | ||||| ||||| || ||| Sbjct 1471216 GCCTTGACATTTTCGATGGTATCGGAAGCTTCGACTTCCAATGTGATGGTCTTGCCAGTC 1471275 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 | ||||||||||| || |||||| Sbjct 1471276 AAGGTCTTGACGAAAATTTGCATT 1471299 >seq350 Length=778331 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||||||||| || |||| || ||||| || || || | ||||| || ||||||| Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| | ||| || ||| || |||||||| |||||||| || ||||| || |||| Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| | || || || || |||||||| || || || || || || |||| Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 635070 AAATCTGCAT 635061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179572102516710