Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 123 3e-23 seq3748 107 2e-18 seq4393 102 9e-17 seq434 93.3 5e-14 seq214 93.3 5e-14 seq142 93.3 5e-14 seq30 91.5 2e-13 seq26 89.7 6e-13 seq350 86.0 7e-12 seq64 86.0 7e-12 seq2678 84.2 2e-11 seq622 84.2 2e-11 seq4182 82.4 8e-11 seq2800 82.4 8e-11 >seq3 Length=8148774 Score = 123 bits (136), Expect = 3e-23 Identities = 235/345 (68%), Gaps = 6/345 (2%) Strand=Plus/Minus Query 14631 ACAGAGCCTCGAACCCGTAAACCTTTTTGTGGAGGCCTTGTTCTGACGGATAGCGACCGA 14690 || || || || || || ||||| ||| || || ||||| |||| || | | | | Sbjct 2337719 ACCGAACCACGGACACGAAAACCGTTTCACGGCGGTCTTGTACTGATAGACACGAATCAA 2337660 Query 14691 TTTGATGCCTACAACGATTACATAATATCGGCCACGTATTTTGAGGGGAAAAAAGTGCAC 14750 ||||| |||||||| ||||| |||| || ||||| ||| | ||||| | ||| Sbjct 2337659 TTTGACAAGTACAACGACTACATTTTATCAGCAACGTACTTTAATTCAAAAAAGATCCAC 2337600 Query 14751 TACAACATTGGTTTATTTTACTATGTACTGTGGAGTATATGCAGTGGCAAGGAGTGGATG 14810 | ||| ||||| | |||||||| || || |||| | ||| |||| ||||||||| Sbjct 2337599 TTCAATATTGGGCTGTTTTACTACGTGCTTTGGAAAAACTGCCAAAGCAAAGAGTGGATG 2337540 Query 14811 GATAAAAATGTGGCTGCCCAATTCCTGAAATACGTCAAACGTCGCATC---GAAACCACA 14867 |||| |||||| || | || ||| ||| |||| || | |||||| ||| ||| Sbjct 2337539 GATATAAATGTTGCCGAACAGTTCAAGAAGTACGCCATGAGACGCATCAGTGAA---ACA 2337483 Query 14868 ACATGCAAGCTTGGACTCTCGTCTCTTCCCTTGGACCCACAAATGAATACGTCACTCCTG 14927 ||||| |||| ||||| ||| | || | ||||| ||| || || || || || Sbjct 2337482 GTTTGCAAAATTGGCCTCTCATCTTTGCCACTAGACCCCCAAGAAAAGACCTCGCTGCTT 2337423 Query 14928 ACCGCATTATGGTATTGTGTCGACCTCTCATCCGACATATTTAAA 14972 ||||| || ||||| || || ||| | || || ||| || ||| Sbjct 2337422 ACCGCGTTGTGGTACTGCGTTGACTTGTCTTCGTGCATTTTCAAA 2337378 >seq3748 Length=1445 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||||||||| |||| | |||||||||| ||||||||||||||||||||| |||||||| Sbjct 1399 ATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 1340 Query 57062 CACTATACTACCGAGGA 57078 ||||||||||||||||| Sbjct 1339 CACTATACTACCGAGGA 1323 >seq4393 Length=1805 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| || ||||||| |||||| ||| | || || ||||||||||||||||| Sbjct 495 CTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAA 554 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | |||||||| || | ||| | | || |||| | ||| |||| | || | Sbjct 555 AATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGT-CTTGAATTTTGGCCTTCACAT 613 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| | ||| || || | ||||||||||| || || || ||||| | Sbjct 614 TTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGA 673 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 674 CAAAGATCTGCAT 686 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||||||||| || || | || || ||| | || || ||||| ||||||||||| Sbjct 1408 TCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAA 1467 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | |||||||| || | || | | ||| ||||| ||||||| ||||| | Sbjct 1468 ATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTT 1527 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| | ||| || || | ||| || ||||| || ||||| || || ||| Sbjct 1528 TCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAACA 1587 Query 42198 AAGATTTGCAT 42208 || |||||||| Sbjct 1588 AAAATTTGCAT 1598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | ||| || || | ||| | || ||| |||||||| ||||| || | | Sbjct 688 CCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGAC 747 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || || ||||| ||||| || || | || ||||| || | || Sbjct 748 AATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGG 807 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| |||||| ||||||| ||||| | | | ||||| | || || Sbjct 808 ATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACT 867 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||||||||| || || || ||||||||||||||||| Sbjct 868 TCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| |||||||| || || || | || || ||| | || || ||||| ||||||||||| Sbjct 951 CTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAA 1010 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | |||||||| |||| || | | || || ||| ||| |||| | ||||| Sbjct 1011 AATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCC-TGAATTTTAGCTTTGACAT 1069 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | ||||||| | || || || | ||||| ||||| || || || || || | Sbjct 1070 TCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAA 1129 Query 42196 CAAAGATTTGCAT 42208 |||| |||||||| Sbjct 1130 CAAAAATTTGCAT 1142 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | |||||| |||||||| | || |||||||||||| ||||| || | | Sbjct 1600 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAC 1659 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || || | || || |||||||| |||||||| || | |||||||| || Sbjct 1660 AGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATC 1712 >seq434 Length=1254451 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41977 ATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 42036 || |||| |||| | || || || ||||| | |||| ||| |||||||||||||| | Sbjct 843853 ATTGACCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGT 843912 Query 42037 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096 | | || || || | || || |||||||| ||||| || || ||||| || ||||| | Sbjct 843913 CTGAAAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTG 843972 Query 42097 CTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGAT 42155 || | | || |||| | ||| |||| | |||| | | | || ||| | | Sbjct 843973 GAGGGATACCTTCTTTGT-CTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCT 844031 Query 42156 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || | ||||| || || || || || ||||| |||||||| ||||| Sbjct 844032 TCCACCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 >seq214 Length=923020 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 548684 CTCCGCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 548625 Query 57067 TACTACCGAGGATT 57080 |||||||| ||||| Sbjct 548624 TACTACCGCGGATT 548611 >seq142 Length=890596 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 56998 AAAAATT--TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||| |||||| |||| | |||||||||| |||| || || |||||||||| || Sbjct 609144 AAAAATTGATTCTCCCCGGCTGGGAATCGAACCCCGGTCCTCCACGCGACAGGCGGAGAT 609085 Query 57056 ACTCACCACTATACTACCGAGGATTGAATA 57085 ||| |||||||||||||||||||||| || Sbjct 609084 ACTATCCACTATACTACCGAGGATTGATTA 609055 >seq30 Length=3281913 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||| || ||||||||||||| ||||| ||||||| Sbjct 216069 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCACGTGACAGGCGGAGATACTGACCACTA 216128 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 216129 TACTACCGAGGAT 216141 >seq26 Length=4002310 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| |||| ||||| | |||| || ||||| ||||||||||| Sbjct 1458217 TCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAA 1458276 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||||||||||| | || | | ||| || ||| |||||| ||||| || Sbjct 1458277 ATCAAACGCTGCTGGTCCGGAGGGATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTC 1458336 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| | || || || | ||||| || || || || | ||||| ||| Sbjct 1458337 TCAATAGTGTCGGATGCCTCGACCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACA 1458396 Query 42198 AAGATTTGCATT 42209 || || |||||| Sbjct 1458397 AAAATCTGCATT 1458408 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||||| |||| || | ||| ||||| ||||| |||||||||| Sbjct 1458409 CCTCCACGAAGACGCAGAACCAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCAGAA 1458468 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || |||| |||||| ||||| || ||||| ||||||||||| | || Sbjct 1458469 AGCGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 1458528 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTT 42130 | || ||| |||| | ||| |||||| || Sbjct 1458529 ATGCCCTCTTTGT-CTTGAATTTTTGCTT 1458556 >seq350 Length=778331 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 ||||| ||||||||||| | ||||| || | || || ||||| || |||||||| || Sbjct 635248 TTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATC 635189 Query 42081 AGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 42140 | | ||||||||||| ||| | || || |||||| ||| || ||||| | | Sbjct 635188 AACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCG 635129 Query 42141 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 42200 | || || | || || || | ||||| ||||| ||||| || || ||||| || Sbjct 635128 ATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGAAA 635069 Query 42201 ATTTGCATTTTC 42212 || ||||| ||| Sbjct 635068 ATCTGCATCTTC 635057 >seq64 Length=1863977 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| |||| || || |||||||||| |||| Sbjct 1060102 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCCTCCACGCGACAGGCGGAGATAC 1060043 Query 57058 TCACCACTATACTACCGAGGATTGAATATAT 57088 | |||||||||||||||||||| |||||| Sbjct 1060042 TAACCACTATACTACCGAGGAT---ATATAT 1060015 >seq2678 Length=18144 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| |||| || || |||||||||| ||||| |||||| Sbjct 16538 TCTCCCCGGCGGGGAATCGAACCCCGGTCCTCCACGCGACAGGCGGAGATACTAACCACT 16597 Query 57066 ATACTACCGAGGAT 57079 |||||||||||||| Sbjct 16598 ATACTACCGAGGAT 16611 >seq622 Length=405864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 258154 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACTGAAGAT 258095 Query 57080 T 57080 | Sbjct 258094 T 258094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 258315 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACTGAAGAT 258256 Query 57080 T 57080 | Sbjct 258255 T 258255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 258453 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACTGAAGAT 258394 Query 57080 T 57080 | Sbjct 258393 T 258393 >seq4182 Length=1742 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| || || |||||||||| ||||| ||||||| Sbjct 50 CTCCCCGGCGGGGAATCGAACCCCGGTCCTCCACGCGACAGGCGGAGATACTAACCACTA 109 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 110 TACTACCGAGGAT 122 >seq2800 Length=9741 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 8067 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACTGAAGAT 8008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543175827578800