Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4393 131 2e-25 seq434 122 9e-23 seq26 116 4e-21 seq350 91.5 1e-13 >seq4393 Length=1805 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | |||||| || ||||| | | | |||||||| |||||||| |||||| Sbjct 3 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 62 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || ||||| || || || | | | || || || |||||||| ||||| Sbjct 63 CAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGG 122 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || |||||| || | | ||| | ||||| | | ||| || Sbjct 123 AATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGAC 182 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | |||||||| || ||||||||||||||||| |||||| || Sbjct 183 TTCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCATGCCT 234 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||| || || | ||||| | | ||||| ||||||||||||||||| Sbjct 687 GCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGA 746 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || |||||||| || || | | | || | ||| || || || ||||| Sbjct 747 CAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGG 806 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||||||| ||| | | ||| | ||||| | | ||| || Sbjct 807 GATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAAC 866 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| |||||||||||||| || ||||| Sbjct 867 TTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||||||||||||||| | ||||||| || |||||||||||||| Sbjct 231 GCCTCCTCGAAGACGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGA 290 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || |||||||| || || | | | || | ||| || || || ||||| Sbjct 291 CAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGG 350 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||| ||||||||||| ||| |||| | || | | ||| | || || | | ||| | Sbjct 351 TATGCCTTCTTTGTC-TTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGA 409 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| ||||| |||||||| || || |||||||| Sbjct 410 CTTCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCAT 458 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | |||||| || ||||| | | | ||||||||||||||||||||||| Sbjct 1143 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGA 1202 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| ||| || || || || |||| | | || | | |||||| || ||||| Sbjct 1203 TAGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGG 1262 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||||||||| || ||| |||| | || | | ||| | || || | | ||| | Sbjct 1263 AATACCTTCTTTATC-TTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAA 1321 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | ||||| ||||| ||||| || ||||| ||||||||| Sbjct 1322 CTTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCATG 1371 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| ||||||||||| ||||| | |||||| || ||||| |||||||| | Sbjct 949 GACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCG 1008 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || | |||||| || || ||||| ||||||||||| || ||| |||| | ||| | Sbjct 1009 AAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATC-CTGAATTTTAGCTTTGAC 1067 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| | ||| || || | || | ||||||||||| |||||||| Sbjct 1068 ATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTT 1127 Query 138600 TACAAAAATCTGCATGGCT 138618 |||||||| |||||| || Sbjct 1128 AACAAAAATTTGCATGCCT 1146 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||| || || || ||||||| |||||||| || ||||| | Sbjct 493 GACTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCAGCG 552 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || | |||||| || || || || |||||||||||||| ||| |||| | || | Sbjct 553 AAAATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTC-TTGAATTTTGGCCTTCAC 611 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || |||| | || ||||| | || | ||||| ||||| ||||| || Sbjct 612 ATTTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTT 671 Query 138600 TACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 672 GACAAAGATCTGCATGCCT 690 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | |||||| || ||||| | | | |||||||||||||||||||||||| Sbjct 1599 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGA 1658 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || || || || || | | || | |||||| || || ||||| Sbjct 1659 CAGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGG 1718 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||| | || | | ||| | || |||| | |||| Sbjct 1719 GATACCTTCTTTGTC-TTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCA 1777 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAG 138593 |||| | || | ||| || ||||| || Sbjct 1778 CCTCTAAGGTGATCGTCTTTCCAGTGAG 1805 >seq434 Length=1254451 Score = 122 bits (134), Expect = 9e-23 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || ||||||||||| | | ||||| |||||||| |||||||| | Sbjct 843858 CCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTC--TG 843915 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| |||| || ||||| || || || | | | || || || |||||||| |||| Sbjct 843916 AAAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAG 843975 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 | |||||||||||||| ||| |||| | || | | ||| | || |||| | ||| Sbjct 843976 GGATACCTTCTTTGTC-TTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCC 844034 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| | || | ||| || ||||| ||||| || ||||| ||||||||| || Sbjct 844035 ACCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATGCCT 844088 >seq26 Length=4002310 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| ||| | ||| | | || ||||| |||||||||||||| Sbjct 1458181 CCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 1458240 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||||||| |||||||| | | || | |||||| ||||||||||| Sbjct 1458241 AGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGG 1458300 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| ||||| || |||||| ||| | | || | ||||||| | ||| ||| Sbjct 1458301 ATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGACC 1458360 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| || || |||||||||||||| Sbjct 1458361 TCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | ||||| | || || || || || |||||||| Sbjct 1457952 GCCTCCACGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGA 1458011 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | || ||||||||||| || | | |||| |||||||| ||||| || || Sbjct 1458012 CAAGGTTCTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGG 1458071 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || |||||| || | | || | ||| || | | || || Sbjct 1458072 AATACCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGAC 1458131 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||||||||||| ||||| |||||||| ||||| Sbjct 1458132 CTCCAAGGTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTGCAT 1458179 >seq350 Length=778331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATT 138486 ||||| || ||||| ||| | ||| || |||||||| ||||| || | |||| Sbjct 635248 TTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATC 635189 Query 138487 AGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCC 138546 | | ||| ||||| || || || ||||||||||| ||| || ||| | | ||| Sbjct 635188 AACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCG 635129 Query 138547 ACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 | ||| || | | ||| ||||| | || | ||||||||| || || |||||||| ||| Sbjct 635128 ATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGAAA 635069 Query 138607 ATCTGCAT 138614 |||||||| Sbjct 635068 ATCTGCAT 635061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496228623140400