Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq350 131 2e-25 seq4393 129 6e-25 seq434 111 1e-19 seq26 98.7 9e-16 seq30 91.5 1e-13 >seq350 Length=778331 Score = 131 bits (144), Expect = 2e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| |||||||||||| | ||||| ||| || |||||||| |||||| ||| Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 |||| | |||||| ||||| || ||||| || |||||| ||| || |||| | || Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||| || || | ||| | |||||| || || || |||||||| | Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 127104 AAATCTGCAT 127113 |||||||||| Sbjct 635070 AAATCTGCAT 635061 >seq4393 Length=1805 Score = 129 bits (142), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| |||||||| | || ||||| || ||||| || || ||| || || || | Sbjct 16 CGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCA 75 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| | |||| ||| || || || ||||| || || || || Sbjct 76 TCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTA 135 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| ||||| | ||| | ||||| | | ||||||||| | ||| | Sbjct 136 TCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATA 195 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||||| ||||| ||||||||||||||||| |||||| || Sbjct 196 GTTTTACCGGTAAGAGTTTTTACAAAAATTTGCATGCCT 234 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | ||| | ||| | ||||| |||||||||||||| || || Sbjct 1372 CCACCACGAAGTCGAAGCACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGTCTGAA 1431 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || |||||||| |||||| | ||||| ||||||||||| ||||| Sbjct 1432 AGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGG 1491 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| ||||| |||||| ||| |||| | ||| | ||||| | ||||| Sbjct 1492 ATACCCTCTTTGTCTTGGATTTT-TGCTTTGACATTTTCAATCGTGTCTGAGGCTTCGAC 1550 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| | || | ||||| || || || ||||| |||||||| |||||| || Sbjct 1551 TTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAACAAAAATTTGCATGCCT 1602 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 || || || | ||||| ||||||||||||||||| ||||| || || || || | Sbjct 700 CGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCA 759 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || || ||||| | ||||| || |||||||| ||||| || ||||| ||| Sbjct 760 TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTG 819 Query 127019 TCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| |||||| ||| |||| | ||| | ||||| | ||| ||||| | || | Sbjct 820 TCCTGGATTTT-TGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGAT 878 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || |||||||||||||| || ||||| Sbjct 879 GGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || | ||| | ||||||||||||||||| || || || Sbjct 916 CCACCACGAAGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAA 975 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || |||||||| |||||| | ||||| ||||||||||||||||| Sbjct 976 AGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGG 1035 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| ||| ||| || |||| | || | ||||| | |||||| Sbjct 1036 ATACCTTCTTTATCC-TGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGAC 1094 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| | || | ||||| || || |||||||| |||||||| |||||| || Sbjct 1095 TTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCATGCCT 1146 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| || ||||| | || |||||||| ||||| ||||| || || || || | Sbjct 244 CGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGACAATGTACGTCCA 303 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || || ||||| | ||||| || |||||||| ||||||||||| || ||| Sbjct 304 TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTTG 363 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||||| ||||| | ||| | || || | ||||||||| | ||| | Sbjct 364 TCTTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGACTTCTAGGGTTATT 423 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || |||||||| || || |||||||| Sbjct 424 GTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCAT 458 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| |||||||| | |||||||| |||||||| ||||| ||| || || || | Sbjct 1612 CGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGACAGTGTACGGCCA 1671 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | ||||| ||||||||||| ||||| || || || ||| Sbjct 1672 TCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCTTCTTTG 1731 Query 127019 TC 127020 || Sbjct 1732 TC 1733 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || | ||| | |||||||| || ||||| || ||||| | Sbjct 460 CCACCACGAAGTCGGAGTACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGAC 519 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || |||||| | ||||| ||||||||||| || || Sbjct 520 AGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGG 579 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||||| ||| | | ||| | || || | | || || Sbjct 580 ATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCAACC 639 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | || | ||||| || || ||||| || ||||| ||||||||| || Sbjct 640 TCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGACAAAGATCTGCATGCCT 690 >seq434 Length=1254451 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| || || ||||| | || |||||||||||||||||||| || Sbjct 843858 CCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAA 843917 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || ||||| | |||| ||| || || || ||||| Sbjct 843918 AGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGG 843977 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||||| ||||| | ||| | || || | | || || Sbjct 843978 ATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACC 844037 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | ||| | ||| || || || ||||| || ||||| ||||||||| || Sbjct 844038 TCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATGCCT 844088 >seq26 Length=4002310 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 ||||| || || ||||| || |||||||| || || || | | ||| || || || Sbjct 1457976 ATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGACAAGGTTCTACCATCTTCGAGTTG 1458035 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 ||||||||| |||| | |||||||| || || || || || ||||| || |||||| Sbjct 1458036 TTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATACCTTCCTTATCTTGGATTTT 1458095 Query 127030 CTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||||| | |||| ||| || | | ||||| || | ||| | ||||| || || Sbjct 1458096 AGCCTTGACATTCTCGATGGTATCTGAAGCTTCGACCTCCAAGGTAATGGTTTTACCAGT 1458155 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||||||| ||||| Sbjct 1458156 CAATGTTTTAACAAAAATTTGCAT 1458179 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| |||| ||| | ||||| || || ||||| ||||| || Sbjct 1458180 TCCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGA 1458239 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | || || |||||||| |||||| | ||||| |||||||| || ||||| Sbjct 1458240 AAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGG 1458299 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| || ||| |||||| |||| | || | ||||| | |||||| Sbjct 1458300 GATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGAC 1458359 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || |||| || || |||||||||||||| Sbjct 1458360 CTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 >seq30 Length=3281913 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| || || ||||| ||| | ||||| ||| || |||||||| || ||| | | Sbjct 593720 CTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAA 593779 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 |||| | ||||| || ||||||||||||||||||||| || || ||| | | | Sbjct 593780 TCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTCT 593839 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 | | ||||||| ||||| || | ||| | || || || ||||| ||||| || | Sbjct 593840 CAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACGA 593899 Query 127104 AAATCTGCAT 127113 |||| ||||| Sbjct 593900 AAATTTGCAT 593909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475468436226800