Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4393 138 1e-27 seq26 114 1e-20 seq350 102 7e-17 seq434 87.8 2e-12 >seq4393 Length=1805 Score = 138 bits (152), Expect = 1e-27 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | ||| || | ||| || || || ||||| || || ||||| ||| Sbjct 1 ATGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCG 60 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| || | | ||| || | || || || || | |||| |||||| ||||| | Sbjct 61 --GACAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTG 118 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| ||||||||||| || ||||| |||| ||| | ||||| |||| || Sbjct 119 GAGGAATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCT 178 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| | |||| ||||| ||||| ||||||||||||||||||||||| Sbjct 179 CGACTTCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 Score = 125 bits (138), Expect = 6e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || ||||| ||||| |||||||| || ||| || | | ||| Sbjct 1389 CACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGTC--TGAAAGTGTACGCCCATCT 1446 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | ||||| || ||| | ||||| || ||||| || || || || || ||||| ||| Sbjct 1447 TCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCT 1506 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || |||||| ||||| ||| | ||||| || | |||||||| || |||| ||| Sbjct 1507 TGGATTTTTGCTTTGACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTT 1566 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||| |||||||||||||| Sbjct 1567 TTTCCTGTTAGGGTTTTAACAAAAATTTGCAT 1598 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || ||||| || || || || ||||| || ||||| || ||| || | | ||| | Sbjct 934 ACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTC--TGAAAGTGTACGCCCATCTT 991 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | ||||| || ||| | ||||| || ||||| || || || || ||||||||||| | Sbjct 992 CGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCT 1051 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| ||||| || | |||||||| | ||||||||| ||||| | |||| Sbjct 1052 GAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTT 1111 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || |||||||| |||||||||||||| Sbjct 1112 TACCAGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | ||| |||| ||| || ||||| || || || || || || || Sbjct 229 ATGCCTCCTCGAAGACGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCC 288 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || | ||| || || || | ||||| |||||||| || | Sbjct 289 --GACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTG 346 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || ||||||||||| ||||||||||| |||| ||| | || || || | || Sbjct 347 GAGGTATGCCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCT 406 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| || || | |||||||| ||||||||||| || || || ||||| Sbjct 407 CGACTTCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCAT 458 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || ||||| || || || || ||||| || || || || Sbjct 685 ATGCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCC 744 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || | ||| || || || | ||||| |||||||| || | Sbjct 745 --GACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTG 802 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || || ||||| || || |||||| ||||| ||| | ||||| || | || Sbjct 803 GAGGGATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCT 862 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || | |||||||| || |||||||||||||| |||||||| Sbjct 863 CAACTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | ||| || | ||| || || || |||||||| || || || || Sbjct 1141 ATGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCC 1200 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || | | || || | || ||||| || | ||||||| || || || | Sbjct 1201 --GATAGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAG 1258 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| |||||||||||||||||||| |||| ||| | || || || | || Sbjct 1259 GAGGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCT 1318 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || | |||||||| || ||||| || ||||| || ||||| Sbjct 1319 CAACTTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || |||||||| || || ||||| || || |||||||| ||| | | | ||| | Sbjct 478 ACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCA--GACAGAGTACGCCCATCCT 535 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || || || ||| | ||||| || ||||| || || || || |||||||| |||| Sbjct 536 CGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCTT 595 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| || | ||| | || ||||||| || || || || || | |||| Sbjct 596 GAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTT 655 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || ||||| || ||||| Sbjct 656 TTCCAGTGAGAGTCTTGACAAAGATCTGCAT 686 >seq26 Length=4002310 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || ||||| || || ||||| || |||||||| || || || Sbjct 1457953 CCTCCACGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTC--TG 1458010 Query 45174 AC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || |||| || ||| || | ||||||||| || | || | || |||||||| || | Sbjct 1458011 ACAAGGTTCTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGG 1458070 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| ||||| |||||||| ||||| |||| || | ||| || |||| |||| Sbjct 1458071 GAATACCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGA 1458130 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || | |||| ||||| || || | ||||| |||||||||||||| Sbjct 1458131 CCTCCAAGGTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTGCAT 1458179 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | | || || || || |||||||| || || ||||||||||| Sbjct 1471297 ATTCCTCCACGAAGACGGAGAACCAGGTGGAGTGTTGATTCTTTCTGAATATTATAATCT 1471356 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | || |||| ||| ||||||||| | || | ||||||||||| || Sbjct 1471357 GAAAGGGTTCTTCCGTCTTCCAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCTGGA 1471416 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTT 45257 |||||||| ||||| |||||||||||| Sbjct 1471417 GGAATGCCCTCTTTGTCTTGAATTTTT 1471443 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | || || ||||| || || |||||||| || || || || || Sbjct 1458178 ATTCCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCA 1458237 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | ||||| || ||| | ||||| || ||||||||||| Sbjct 1458238 GAAAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGA 1458297 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || |||||||| || ||||| ||||| || | || | |||||||| | ||| Sbjct 1458298 GGGATACCCTCTTTATCCTGGATTTTAGCTTTGA-CGTTCTCAATAGTGTCGGATGCCTC 1458356 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || || || || | || || |||||||| ||||| Sbjct 1458357 GACCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || |||||||| || |||||||||||||| |||||||| || |||| ||| | | Sbjct 1471174 CGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCGATG 1471233 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 || ||||||| |||||||| | || | || ||||| || | || || || |||||| Sbjct 1471234 GTATCGGAAGCTTCGACTTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATT 1471293 Query 45336 TGCAT 45340 ||||| Sbjct 1471294 TGCAT 1471298 >seq350 Length=778331 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATC 45212 ||||||||||| |||||| | || ||| || | ||||| || ||| | ||| Sbjct 635248 TTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATC 635189 Query 45213 AATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCT 45272 || | |||||||| || |||||||||||||| || || || || ||||| ||| Sbjct 635188 AACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCG 635129 Query 45273 ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAA 45332 | ||| || |||| ||| || || || || | |||||| || || || |||||||| ||| Sbjct 635128 ATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGAAA 635069 Query 45333 ATTTGCATC 45341 || |||||| Sbjct 635068 ATCTGCATC 635060 >seq434 Length=1254451 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--AT 45186 || |||| ||| || || || || ||||| ||||| || || ||| || | || || Sbjct 843873 AAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTC--TGAAAGTGTGCGACCAT 843930 Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTAT 45246 | || | || || || || | |||| |||||| ||||| || || || |||||||| | Sbjct 843931 CTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCTTTGT 843990 Query 45247 CTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 |||||||||| |||| ||| | || ||||||| || || || | || | || Sbjct 843991 CTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCG 844050 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||| || ||||| || ||||| Sbjct 844051 TCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451972435532200