Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq26 127 5e-24 seq30 120 7e-22 seq4393 118 2e-21 seq434 102 2e-16 seq350 95.1 3e-14 seq353 84.2 5e-11 >seq26 Length=4002310 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || || || || || || |||| |||||||| | ||| || Sbjct 1457959 CGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGACAAGGTT 1458018 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| || || ||||| || |||||||||||||||||||| || ||| ||| Sbjct 1458019 CTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATACCT 1458078 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||| || |||| ||| |||| | ||| || ||||| Sbjct 1458079 TCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGACCTCCAAG 1458138 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || | ||||| ||||||||||| Sbjct 1458139 GTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTG 1458176 Score = 120 bits (132), Expect = 7e-22 Identities = 113/143 (79%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || |||||||| || || ||||| || | |||||| |||| | ||| Sbjct 1458415 CGAAGACGCAGAACCAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCAGAAAGCGTC 1458474 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| | |||||| || || |||||||||||||||||||| ||| ||| || Sbjct 1458475 CTTCCATCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCC 1458534 Query 199529 TCTCGCTCCTGAATCTTTTGCTT 199551 ||| || ||||| |||||||| Sbjct 1458535 TCTTTGTCTTGAAT-TTTTGCTT 1458556 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || ||||| || | ||||||||||| | |||||||| ||||| | ||| Sbjct 1472162 GTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAACTG 1472221 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || || |||||||||||||||||||| || || |||||| || |||||||| Sbjct 1472222 CTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATCTT 1472281 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || || | ||| || | || || || || || || || ||||| || || Sbjct 1472282 GGCCTTGACATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCAGT 1472341 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||| || || || || Sbjct 1472342 TAAAGTTTTAACGAAGATCTG 1472362 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || ||||| || ||||| || | ||||||||||| | ||| Sbjct 1458187 CGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTT 1458246 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || || ||||| || || ||||| || | |||||||||||||||| || || Sbjct 1458247 CTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGGATACCC 1458306 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || ||| || || ||| || | ||||| | || || || || | Sbjct 1458307 TCTTTATCCTGGAT-TTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGACCTCTAG 1458365 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || |||||||| || Sbjct 1458366 GGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTG 1458404 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || |||||||||||||||||||| || ||| |||||| || |||||||| | Sbjct 1471159 CCAGCAAAGATGAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGAATCTTGGCC 1471218 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || || ||||| ||| || | | ||| || ||||| ||||| ||||| || || | Sbjct 1471219 TTGACATTTTCGATGGTATCGGAAGCTTCGACTTCCAATGTGATGGTCTTGCCAGTCAAG 1471278 Query 199610 GTTTTCACAAAAATTTG 199626 || || || |||||||| Sbjct 1471279 GTCTTGACGAAAATTTG 1471295 >seq30 Length=3281913 Score = 120 bits (132), Expect = 7e-22 Identities = 140/188 (74%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||| | | ||| | |||||||| ||||| || |||||||| Sbjct 593719 CCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAA 593778 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || | | |||||||||||| || || || ||||| ||||| ||||||| Sbjct 593779 ATCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTC 593838 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | ||||| | | ||| || ||||| ||||| ||||||||||| || |||||||| Sbjct 593839 TCAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACG 593898 Query 199619 AAAATTTG 199626 |||||||| Sbjct 593899 AAAATTTG 593906 >seq4393 Length=1805 Score = 118 bits (130), Expect = 2e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| ||||| || ||||| ||||| | ||| ||||| | | || Sbjct 922 CGAAGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGTA 981 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||| || || ||||| || | ||||||||| || ||| || ||| Sbjct 982 CGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCT 1041 Query 199529 TCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| ||| |||| || || | ||||| | | || || || | Sbjct 1042 TCTTTATCCTGAAT-TTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAG 1100 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || |||||||| ||||||||||| Sbjct 1101 AGTGATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTG 1139 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| | || || || |||||||| || | ||| ||||| | || || Sbjct 9 TCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGT 68 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| |||||||| || || || || || || || ||||| ||| |||||| Sbjct 69 ACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCC 128 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||| || || ||| ||| ||| | ||||| | | || || || || Sbjct 129 TTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAA 188 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || |||||||| ||||||||||| Sbjct 189 GGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTG 227 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| | || || || ||||||||||| | ||||||||| | || || Sbjct 1605 TCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGACAGTGT 1664 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| |||||||| || ||||| || | ||||||||| || ||| || || Sbjct 1665 ACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACC 1724 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || ||||| || ||| ||| ||| | || || | | ||| || || || Sbjct 1725 TTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAA 1784 Query 199588 CGTGATCGTCTTACCCGTGAG 199608 ||||||||||| || ||||| Sbjct 1785 GGTGATCGTCTTTCCAGTGAG 1805 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| ||||| || || || ||||| | || ||||| | | || Sbjct 1378 CGAAGTCGAAGCACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGTCTGAAAGTGTA 1437 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||| || || ||||| || | ||||||||| || ||| || || Sbjct 1438 CGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCC 1497 Query 199529 TCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || |||||||| || ||| | ||||||| | ||| || || | Sbjct 1498 TCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAG 1556 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || ||||| ||||||||||| Sbjct 1557 CGTAATTGTTTTTCCTGTTAGGGTTTTAACAAAAATTTG 1595 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| | || || || ||||||||||| | ||||||||| | | || Sbjct 1149 TCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGT 1208 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||| |||||||||||||| || || | | ||| || || ||| ||| || Sbjct 1209 GCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACC 1268 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || ||||| || ||| ||| ||| | || || | | || || |||| Sbjct 1269 TTCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAG 1328 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || ||||| || || Sbjct 1329 TGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTG 1367 >seq434 Length=1254451 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| | || | || || || ||||| ||||| | |||||||| | | || Sbjct 843863 TCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGT 843922 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| |||||||| || || || || || || || ||||| ||| || || Sbjct 843923 GCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACC 843982 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || ||||| || ||| ||| ||| | || || | | ||| || || || Sbjct 843983 TTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAA 844042 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || |||||||| || ||||| || || Sbjct 844043 GGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTG 844081 Score = 102 bits (112), Expect = 2e-16 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| | || || || |||||||| || | ||| ||||| | || || Sbjct 844091 TCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGT 844150 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| |||||||| || ||||| || | ||| ||||| || ||| || || Sbjct 844151 ACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACC 844210 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || || || |||||||| || ||| | ||||| | | ||| || || | Sbjct 844211 CTCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACCTCTA 844269 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCT 199640 | ||||||||||| || ||||| || || ||||| || || ||| || |||| Sbjct 844270 AGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTG---CATGTTTGCCT 844320 >seq350 Length=778331 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||||| ||||| || | | ||| | ||||| || ||||| || || |||||||| Sbjct 635248 TTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATC 635189 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 | | ||||||||| || ||| |||||| ||||| ||||| || || |||| Sbjct 635188 AACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCG 635129 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | ||| || | | || || || | |||||||| ||||||||||| ||||| || ||| Sbjct 635128 ATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGAAA 635069 Query 199622 ATTTG 199626 || || Sbjct 635068 ATCTG 635064 >seq353 Length=1135777 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || || || || || | ||||||||||| ||| ||||||||||| Sbjct 144437 AGCACAAGATGAAGTGTGGATTCTTTCTGAATGTTGTAGTCAGACAAGGTCCTTCCATCC 144496 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || ||||| || || |||||||| | | ||||||||| || Sbjct 144497 TCAAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGG 144537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178839353639815