Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq30 127 2e-24 seq3 127 2e-24 seq4393 111 2e-19 seq434 109 6e-19 seq350 105 8e-18 seq26 95.1 1e-14 >seq30 Length=3281913 Score = 127 bits (140), Expect = 2e-24 Identities = 147/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 46398 TACTCTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 ||| | ||||| ||||| ||||||||||| |||||||| | || |||||||| |||||| Sbjct 593713 TACGCACCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCG 593772 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| ||||| | |||||||| | || | || |||||||||| ||||| ||| Sbjct 593773 GCGAAAATCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTC 593832 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | || | | ||||| | ||| || |||| ||||| || || |||||||| ||| Sbjct 593833 ACGTTCTCAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTT 593892 Query 46577 TTAACAAAGATTTGCAT 46593 || || || |||||||| Sbjct 593893 TTCACGAAAATTTGCAT 593909 >seq3 Length=8148774 Score = 127 bits (140), Expect = 2e-24 Identities = 406/620 (65%), Gaps = 25/620 (4%) Strand=Plus/Minus Query 14284 AAATTTACGGCCGACGTCAAAATTGAATTTCCCGACATACTACTAGACGAAGACGACGGT 14343 || ||||| | ||| |||||||| || || ||||| | | ||||| ||| | || Sbjct 2337992 AATTTTACAGACGAGCAAAAAATTGAGTTCCCTGACATCATTTTGGACGATGACAAGGGG 2337933 Query 14344 GTTCCTGTGGTGATTCTAACAAAATTAAATTTGCT-AGAGAATTTAATCT-----ATACA 14397 | || || || |||||||| |||| || |||| | | || ||| | | |||| Sbjct 2337932 ATCCCAGTCGTTATTCTAACTGAATTGGATCTGCTGAAAAAAATTATTTTCCATGATACG 2337873 Query 14398 GA-TCAACTCA---ACA-----CGAGTTTCAGCAAATTTAAATCTACCATGGAGTGTCCA 14448 | |||| | ||| | ||||| ||||| || || || || ||||| ||||| Sbjct 2337872 TACTCAAACAATGTACAACCTGCTAGTTTTAGCAAGTTCAAGTCAACTATGGAATGTCCG 2337813 Query 14449 TTGTTTTTGCTCGGCAACAACGAGCTGTCAC--AGTCTATTGGTTACTATTACAATCTAA 14506 |||||||| | | || || | ||| |||| || ||||||| || | || | Sbjct 2337812 TTGTTTTTAGTTAATGATAAAGA--TATCAGTGAGTCAATCGGTTACTTCTATA--CTTA 2337757 Query 14507 ACGCGTTTA--AACAGCTGCTGGACCATCATAATTTTACGGAGCCTCGCACACGCAAACC 14564 ||||| |||| | ||| || |||| || || || || ||||| ||||| Sbjct 2337756 CGATGTTTACAAACAATTTTTGGCTCACGATAAAAAGACCGAACCACGGACACGAAAACC 2337697 Query 14565 TTTTTGCGGAGGACTGGTGTTGACAGACACCGATAGATTCGATGCATACAACGATTACGT 14624 ||| ||| || || || ||| |||||| || ||| || |||||||| ||| | Sbjct 2337696 GTTTCACGGCGGTCTTGTACTGATAGACACGAATCAATTTGACAAGTACAACGACTACAT 2337637 Query 14625 GATATCAGCCACGTACTTTGACGGAAAAAAGGTAAATTACAATAGTGGTTTATTTTATTA 14684 ||||||| ||||||||| | ||||||| | | | ||||| ||| | ||||| || Sbjct 2337636 TTTATCAGCAACGTACTTTAATTCAAAAAAGATCCACTTCAATATTGGGCTGTTTTACTA 2337577 Query 14685 TGTACTCTGGAAATTGTGTAGTGACAAAGAGTGGATGGATAAGAATGTACTTGATCAGTT 14744 || || |||||| || ||||||||||||||||| ||||| || ||||| Sbjct 2337576 CGTGCTTTGGAAAAACTGCCAAAGCAAAGAGTGGATGGATATAAATGTTGCCGAACAGTT 2337517 Query 14745 TTTGAAATACGTCAAGCGTCGCATC-GAGACTACCACGTGCAAGCTTAGTCTTTCTTCGC 14803 ||| |||| || | | |||||| | || || ||||| || | || || || Sbjct 2337516 CAAGAAGTACGCCATGAGACGCATCAGTGA-AACAGTTTGCAAAATTGGCCTCTCATCTT 2337458 Query 14804 TTCCCATGGACCCACAAATGAATACGTCACTATTGACCGCTCTGTGGTATTGTGTCGACT 14863 | || | ||||| ||| || || || || | ||||| ||||||| || || |||| Sbjct 2337457 TGCCACTAGACCCCCAAGAAAAGACCTCGCTGCTTACCGCGTTGTGGTACTGCGTTGACT 2337398 Query 14864 TGTCATCTGAAATATTCAAA 14883 |||| || || |||||| Sbjct 2337397 TGTCTTCGTGCATTTTCAAA 2337378 >seq4393 Length=1805 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | ||| || || ||||| | ||| ||| ||||| || |||||||| | Sbjct 686 TGCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCG 745 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | || || | || ||||| |||||||| || || ||||| || ||||| || | | Sbjct 746 ACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAG 805 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||| |||||| ||| || |||| | | | ||||| | || | Sbjct 806 GGATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAA 865 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||||||||| || || ||||| |||||||||||||| Sbjct 866 CTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | |||| || ||||| ||||| ||||| || || || ||| | || || Sbjct 1389 CACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTC 1448 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||| || || ||||| ||||| |||||||| || | || | | ||| ||||| Sbjct 1449 GAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTG 1508 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||| || |||| | | | |||||| | ||| || || | ||| || ||||| Sbjct 1509 GATTTTTGCTTTGACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTT 1568 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||||||||| |||||||| Sbjct 1569 TCCTGTTAGGGTTTTAACAAAAATTTGCAT 1598 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | |||| ||| ||||| || || ||||| || || || ||| | || ||| Sbjct 934 ACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCG 993 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || || ||||| ||||| |||||||| |||| || | | || || ||| Sbjct 994 AGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGA 1053 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || |||| || | | ||||||| | || || || | ||||| ||||| Sbjct 1054 ATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTA 1113 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||||||||| |||||||| Sbjct 1114 CCAGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | |||||| |||| ||| | ||| ||||||||| || |||||||||| Sbjct 1598 TGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGG 1657 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 | || || || | || || ||||||||||| ||||| ||||| |||||||| || Sbjct 1658 ACAGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATC 1712 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | |||||| |||| ||| | || |||||| || || || ||||||| Sbjct 2 TGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGG 61 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || |||||||||||||| || || |||| || || ||||| | | Sbjct 62 ACAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAG 121 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || || ||| ||| || ||||| | | | ||||| | || | Sbjct 122 GAATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGA 181 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | || || ||||| || || || ||||| ||||| |||||||| Sbjct 182 CTTCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 >seq434 Length=1254451 Score = 109 bits (120), Expect = 6e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | |||||| |||| ||| | || |||||| || || || ||||||| Sbjct 844084 TGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGG 844143 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || |||||||||||||| ||||| ||||| || ||||| || | | Sbjct 844144 ACAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAG 844203 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||| ||||| ||| || |||| | | | |||||| | ||||| Sbjct 844204 GGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCA 844263 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 | || | ||||| || || || || || || || |||||||| ||||| ||||| Sbjct 844264 CCTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCATGTTTGC 844318 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 || || || | ||| | ||| ||| ||||| ||||||||||| || || ||||| | Sbjct 843870 CGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTGCGACCA 843929 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||| || || |||| || || ||||| | || | | || ||| Sbjct 843930 TCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCTTTG 843989 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || || || ||||| | | | || ||| | |||||| || | ||||| Sbjct 843990 TCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATC 844049 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || |||||||| ||||| Sbjct 844050 GTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 >seq350 Length=778331 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 |||||||||||||| ||||| |||||||| | || |||||||| ||||| ||||| ||| Sbjct 635248 TTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATC 635189 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525 || | ||||||||||| || | || || |||||| |||||| |||| | | Sbjct 635188 AACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCG 635129 Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 | || || | || || || | ||||| ||||| ||||| || ||||| || || Sbjct 635128 ATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGAAA 635069 Query 46586 ATTTGCATTTT 46596 || ||||| || Sbjct 635068 ATCTGCATCTT 635058 >seq26 Length=4002310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||||| | ||| ||||| || || |||||||| || ||||| | | Sbjct 1458192 ACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCC 1458251 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||| || || ||||| ||||| ||||||||||| | || | | ||| || Sbjct 1458252 GTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGGATACCCTCTTT 1458311 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| || |||| || | | |||||| | || || || | ||||| Sbjct 1458312 ATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGACCTCTAGGGTGAT 1458371 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || |||| || || ||||| || |||||| Sbjct 1458372 AGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 1458408 Score = 86.0 bits (94), Expect = 7e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 46358 TATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTG 46417 ||| | |||||||| | | ||| | || ||||| | ||| || || ||||||||| Sbjct 1457944 TATAAGTTGCCTCCACGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTG 1458003 Query 46418 TAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGG 46477 ||||| || | || | | || ||||| || || || || || || | ||||||||| Sbjct 1458004 TAGTCTGACAAGGTTCTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGG 1458063 Query 46478 TCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTC 46537 || | || | | ||||| || ||| || ||||| || | | || || Sbjct 1458064 TCAGGGGGAATACCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAA 1458123 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | ||| || |||| || |||||||| || |||| ||||||||||| ||||||||| Sbjct 1458124 GCTTCGACCTCCAAGGTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTGCATT 1458180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565199928461400