Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq350 123 2e-23 seq4393 118 1e-21 seq26 113 5e-20 seq434 111 2e-19 seq30 105 7e-18 >seq350 Length=778331 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||||||||| |||||||| ||||| |||||| | || || ||||| Sbjct 635058 AAGATGCAGATTTTCGTAAAAACCCTCACGGGTAAAACGATCACCCTTGAGGTTGAGGCT 635117 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | ||| | |||| || |||| |||||||| || ||||| ||||| Sbjct 635118 TCTGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCCGAC 635177 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| || | || | ||| ||||||||||| || || | ||||| || ||| ||| Sbjct 635178 CAGCAGAGGTTGATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTAC 635237 Query 38421 AACATCCAAAA 38431 || |||||||| Sbjct 635238 AATATCCAAAA 635248 >seq4393 Length=1805 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| |||||||||||||| | || || |||||| | Sbjct 1370 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 1311 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| | || | ||||| | || ||||| || ||||| | || || Sbjct 1310 GATACAATTGAAAACG-TCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCA 1252 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | | |||| || || || ||||| || |||| |||||| || |||||||| Sbjct 1251 ACAGAGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACTACAA 1192 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| |||||||| | || || |||||||| ||||| | |||| ||| Sbjct 1191 CATTCAAAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGGC 1143 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || || ||||| || || | || ||||| ||| | Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | |||| |||||||| ||||||||||| || || | || || Sbjct 1538 GACACGATTGAAAATG-TCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCA 1480 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| || |||||||| || || | ||| || || ||||| || Sbjct 1479 GCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAA 1420 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||| ||| | || || ||| | ||||| || Sbjct 1419 TATTCAAAAAGAATCTACACTCCATCTTGTGCTTCG 1384 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| || || |||||||||||||| | || || |||||| | Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| |||||||| ||||||||||| || || | || || Sbjct 854 GACACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATCAG 795 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || ||||| || || || || | || || | ||||||||| Sbjct 794 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 735 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| || | || || ||| | || | ||| | |||| ||| Sbjct 734 ATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGGC 687 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAA 38323 ||||| || || || |||||| | || || || || |||| | | | ||||| | || Sbjct 1805 CTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCCGATACAATTGAAAACG-TCAA 1747 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | ||||| | |||||||| || || || | || || ||||| | |||| ||| || Sbjct 1746 GGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAGCAGCGTTTGATTTTCGCTGG 1687 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || || | || || || |||||||||||| |||||||| | || || Sbjct 1686 CAAGCAGCTTGAAGATGGCCGTACACTGTCCGACTACAACATTCAAAAGGAGTCTACCCT 1627 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | |||| ||| Sbjct 1626 TCATTTGGTCTTGCGTCTCCGAGGAGGC 1599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || |||||||| || ||| | || ||||||||| | Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||||| | || | ||||| | |||||||| || || || | || || Sbjct 398 GATACGATTGAAAACG-TCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCA 340 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| || ||||| || || || || | || || | |||||||| Sbjct 339 GCAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAA 280 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || || | || || ||||| || ||||| | |||| ||| Sbjct 279 CATTCAGAAAGAGTCAACTCTCCATTTAGTTTTGCGTCTTCGAGGAGGC 231 >seq26 Length=4002310 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || | || || || || |||||| | || |||||||| | Sbjct 1458408 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTAGAGGTCGAGGCATC 1458349 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | |||| | |||| ||||||| || |||||||| || || | |||| Sbjct 1458348 CGACACTATTGAGAACG-TCAAAGCTAAAATCCAGGATAAAGAGGGTATCCCTCCGGACC 1458290 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | |||| ||| || |||||||| || |||| | || || ||||||| Sbjct 1458289 AGCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAGGACGGCAGAACTCTTTCTGACTACA 1458230 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || |||||| | || || ||| |||| |||||| || | || || Sbjct 1458229 ACATTCAGAAGGAATCTACTCTTCATCTGGTTCTGCGTCTGCGTGGTGG 1458181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || ||||| ||||| || | || |||||||| | Sbjct 1472365 ATGCAGATCTTCGTTAAAACTTTAACTGGCAAGACCATTACTTTAGAGGTCGAGGCATCT 1472306 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || || | |||||||| || || ||| | ||||| Sbjct 1472305 GATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAAGGCATCCCCCCAGACCAG 1472246 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||| | || |||| | || || ||||||||| Sbjct 1472245 CAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAAGACGGAAGGACACTTTCTGACTACAAC 1472186 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTT 38449 || || |||||| | || || || || Sbjct 1472185 ATTCAGAAGGAATCCACCCTTCACTT 1472160 >seq434 Length=1254451 Score = 111 bits (122), Expect = 2e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| || || || |||||| | || || || || Sbjct 844316 AAACATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGC 844257 Query 38300 CACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||| | || ||| | | |||| |||||||| ||||||||||| || || | | Sbjct 844256 TTCTGACACGATTGAAAATG-TCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAG 844198 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || || || | |||| ||| ||||| ||||| || || | || || || ||||| Sbjct 844197 ATCAGCAACGTTTGATTTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACT 844138 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | ||||| || ||||| | || || |||||||| ||||| | |||| ||| Sbjct 844137 ATAACATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGGC 844085 >seq30 Length=3281913 Score = 105 bits (116), Expect = 7e-18 Identities = 141/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || ||||| || || |||||| | || ||||| ||| | Sbjct 593909 ATGCAAATTTTCGTGAAAACCCTGACGGGTAAGACTATCACCTTGGAGGTCGAAGCCTCG 593850 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| || || | ||||| Sbjct 593849 GACACAATTGAGAACG-TGAAGGCCAAGATACAGGACAAGGAGGGCATACCTCCGGACCA 593791 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| ||| ||||||||||| || || | ||||| || ||||||||| Sbjct 593790 GCAAAGGTTGATTTTCGCCGGCAAACAGCTCGAAGATGGCCGCACTCTTTCCGACTACAA 593731 Query 38423 CATCCA-AAAGG 38433 |||||| ||||| Sbjct 593730 CATCCAGAAAGG 593719 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || | || ||||||||||| ||||| || | || |||||||| || || |||| Sbjct 991670 CCTCATCGCGAGAGATGAGTTCGTTACTGAAGGTAAGACCCGGCATGAGTCCTCGCTTTT 991611 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | |||||||| || || || |||||||| || |||| || ||||| || ||||||| Sbjct 991610 TCAGCCAAAAAATAGCTGCAAAACTGCCACTGAAAAAGATACCTTCGACTGCAGCGAAAG 991551 Query 133037 CCACCAGGCGCTCGCCGAACGTGGC---TTCTTTGCTGGCGATCCAGCGCAGCGCCCATT 133093 | | | || ||| | || || || || ||||| |||||| || ||||| | Sbjct 991550 CAATAACACGTTCGGCAAATGTAGCGCTCTCATTGCT---AATCCAGTTGAGAGCCCAGT 991494 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 ||| |||| | || || |||| || || ||||| || || || Sbjct 991493 TGGCTTTTTTAGTAACACATGGCAGAGTCTCAATGGCATTAAATAA 991448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500138756988800