Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq26 134 5e-26 seq4393 131 7e-25 seq434 98.7 4e-15 >seq26 Length=4002310 Score = 134 bits (148), Expect = 5e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||||||| ||||||||||||| ||||| | || || ||| | || Sbjct 1458180 AATGCAAATTTTTGTTAAAACATTGACTGGTAAAACCATTACCTTGGAGGTCGAAGCTTC 1458121 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| || | | || ||||| |||||||||||||| ||||| ||||| || Sbjct 1458120 AGATACCATCGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGTATTCCCCCTGACCA 1458061 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || || | || |||||||| |||||||| ||||| ||| | || || || Sbjct 1458060 GCAGCGTCTCATCTTTGCTGGAAAACAACTCGAAGATGGTAGAACCTTGTCAGACTACAA 1458001 Query 391229 TATTGATAAGGATGCAACACTTCA 391252 ||| | || || | ||||| || Sbjct 1458000 TATCCAGAAAGAATCCACACTACA 1457977 Score = 125 bits (138), Expect = 3e-23 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 391077 GGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAA 391136 || || || ||||| | || |||||| |||| |||| |||||| | ||| |||| Sbjct 1471499 GGAAAGACAATTACCTTAGAGGTTGAAGCATCAGATACAATTGAAAACGTAAAAGCAAAA 1471440 Query 391137 ATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAA 391196 |||||||| || || || |||||||| || || |||||| | |||||| |||| || ||| Sbjct 1471439 ATTCAAGACAAAGAGGGCATTCCTCCAGACCAGCAACGTCTCATTTTCGCAGGAAAGCAA 1471380 Query 391197 CTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 || ||||| |||||||| | | |||||||||||| | || || ||||||| ||| Sbjct 1471379 CTGGAAGACGGAAGAACCCTTTCAGATTATAATATTCAGAAAGAATCAACACTCCAC 1471323 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || ||||||||||| | ||||| || || |||||| | || || || || Sbjct 1472368 ATCATGCAGATCTTCGTTAAAACTTTAACTGGCAAGACCATTACTTTAGAGGTCGAGGCA 1472309 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||||||| |||||| | | || || |||||||| || ||||| || || || || Sbjct 1472308 TCTGATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAAGGCATCCCCCCAGAC 1472249 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || || ||| | || || | || || || | ||||| ||||| || | | || || Sbjct 1472248 CAGCAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAAGACGGAAGGACACTTTCTGACTAC 1472189 Query 391227 AATATTGATAAGGATGCAACACTTCACTT 391255 || ||| | ||||| | || |||||||| Sbjct 1472188 AACATTCAGAAGGAATCCACCCTTCACTT 1472160 >seq4393 Length=1805 Score = 131 bits (144), Expect = 7e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||||||||| || ||||| ||||| || || || || || || | || Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || ||||||||||| || ||||| || ||||| ||||| Sbjct 398 GATACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCAG 339 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| ||||| | || || ||||| ||||||||| | || ||| |||| || || Sbjct 338 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 279 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | || || |||| || || ||||| || | || ||||| Sbjct 278 ATTCAGAAAGAGTCAACTCTCCATTTAGTTTTGCGTCTTCGAGGA 234 Score = 118 bits (130), Expect = 4e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| |||||||| || ||||||||||| || ||||| || || || | || Sbjct 1142 ATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTCC 1083 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| |||||||| ||||| ||||| || ||||| ||||| Sbjct 1082 GACACGATTGAGAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCTCCCGATCAG 1023 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || ||||| || |||||||| | || | | || ||||| Sbjct 1022 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAC 963 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | || || | ||||| || Sbjct 962 ATTCAAAAAGAGTCTACACTCCA 940 Score = 118 bits (130), Expect = 4e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || || ||||| ||||| || || || || ||||| | ||| Sbjct 1370 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 1311 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || |||||||||||||| ||||| ||||||||||||||| Sbjct 1310 GATACAATTGAAAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 1251 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || ||||| | || || || |||||||| || | || | |||| || || Sbjct 1250 CAGAGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACTACAAC 1191 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | ||||| | || ||||| || || || | || ||||| Sbjct 1190 ATTCAAAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGA 1146 Score = 114 bits (126), Expect = 5e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| ||||| || || ||||| |||||| | || Sbjct 686 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAAACCATCACACTTGAGGTTGAAGCTTCC 627 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || ||||||||||| || ||||| || || || ||||| Sbjct 626 GATACAATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 567 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || || || || || ||||| | ||| || | |||||||| Sbjct 566 CAGCGTTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACTCTGTCTGATTATAAC 507 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 506 ATTCAGAAGGA 496 Score = 113 bits (124), Expect = 2e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || |||||||||||||| | || || || | ||| Sbjct 230 ATGCAAATTTTTGTAAAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTCT 171 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||| || ||||| |||||||||||||| || ||| Sbjct 170 GACACAATTGAAAACGTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCAA 111 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | ||||| | || || || || |||||||| | || || | || ||||| Sbjct 110 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTATAAC 51 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | ||||| | || ||||| || || || | || ||||| Sbjct 50 ATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGA 6 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || ||||| || || || || | || || ||| | || |||| |||||| | || Sbjct 1805 CTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCCGATACAATTGAAAACGTCAAG 1746 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 ||||||||||| || ||||| || ||||| ||||| || ||||| |||||| | || Sbjct 1745 GCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAGCAGCGTTTGATTTTCGCTGGC 1686 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 || || ||||||||||| | || || | || || || ||| | ||||| | || ||| Sbjct 1685 AAGCAGCTTGAAGATGGCCGTACACTGTCCGACTACAACATTCAAAAGGAGTCTACCCTT 1626 Query 391251 CACTTAGTATTAAGACTGAGAGGA 391274 || || || || | || ||||| Sbjct 1625 CATTTGGTCTTGCGTCTCCGAGGA 1602 >seq434 Length=1254451 Score = 98.7 bits (108), Expect = 4e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| || || || || | || || ||| | || Sbjct 844084 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCC 844025 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || ||||||||||| || ||||| || ||||| || ||| Sbjct 844024 GATACAATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGACCAA 843965 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | ||||| | || || || || |||||||| | || | | || || ||| Sbjct 843964 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTACAAT 843905 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | |||||||| ||||| ||| |||| |||| Sbjct 843904 ATTCAAAAAGAGTCCACACTTCATTTAGTTTTACGACTTCGAGG 843861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975580565858060