Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq618 105 5e-17 seq165 104 2e-16 seq15 98.7 8e-15 >seq618 Length=271502 Score = 105 bits (116), Expect = 5e-17 Identities = 147/200 (74%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 870785 ATTACAAAG---AAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCAT 870841 |||| |||| ||| ||||| | |||| ||| |||||| |||| |||||||||||| Sbjct 40938 ATTAGAAAGCGCAAAGTTATTATTGATTTCTCTAGCCCAAATGTTGCCAAAGAAATGCAT 40879 Query 870842 ATTGGACATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGA-AATGTG 870900 |||| || || || |||||||| ||||| || |||| ||| | || || || | Sbjct 40878 GTTGGCCACTTGAGGTCAACTATAATTGGCGATAGTATTGCCAGGTTGTTGGAGTATCT- 40820 Query 870901 TGGACACGATGT-TTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGT 870959 ||| |||||||| ||| || | ||||| || || || |||||||| ||||| || |||| Sbjct 40819 TGGTCACGATGTATTAAGGT-TGAATCACGTTGGAGACTGGGGAACGCAATTTGGAATGT 40761 Query 870960 TAATTGCTTATATTAAAAAT 870979 | ||| || || || || || Sbjct 40760 TGATTACTCATCTTGAAGAT 40741 >seq165 Length=1028735 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 |||||||| |||| || | || || |||| ||||| ||||| ||||| || || | Sbjct 586563 TTTGTCTTCAGTTTTGTCCATGCCGTAGGCAAGTGCAGCCGCAGTAGGTTCGTTGATGAC 586622 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 || | || || ||||| | ||| ||| || ||||| || ||||||||||| ||||| Sbjct 586623 TCGAAGCACGTTCAGACCGGAGATTTGTCCAGCGTCTTTTGTAGCTTGTCTTTGGGAATC 586682 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||||| || || || ||||| |||||||||| Sbjct 586683 GTTAAAGTAGGCGGGCACAGTGATAACGGCAT 586714 >seq15 Length=2982310 Score = 98.7 bits (108), Expect = 8e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 634439 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 634498 |||||||||||||| |||||| | |||||| || | | |||| |||||| | || || Sbjct 1252723 ATTTCTGTTTGGAACAATGGTAAAGGTATTCCAGTTGTAGTTCACAAAGAAGAAAAAATG 1252664 Query 634499 TGGGTACCATCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAG 634558 | || ||| | ||||| ||||| | | | |||||| ||||||| ||| | | ||| Sbjct 1252663 TTTGTTCCAACTATGATCTTTGGTCACTTACTGACGTCTTCTAATTATGATGATGAAGAG 1252604 Query 634559 GAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 634610 |||||| ||| || | ||| |||| ||| |||||||| |||||||| Sbjct 1252603 GAAAAAGTAACTGGAGGCAGAAACGGTTATGGTGCTAAGCTGTGTAATATTT 1252552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780552201164170