Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq452 159 4e-34 seq85 147 3e-30 seq44 140 4e-28 seq351 111 2e-19 seq15 82.4 1e-10 >seq452 Length=772944 Score = 159 bits (176), Expect = 4e-34 Identities = 291/421 (69%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||| | || ||||| || || || | |||||||||||||| || Sbjct 376021 ATCGAAGTCCTCTCCACCGAGATGCGTATCGCCAGCCGTGGACTTGACTTCAAAGATGCC 375962 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || ||| | | | |||||||| ||||| ||||| || || || |||||||| || Sbjct 375961 ATCCTCGATGGTAAGGATGGAAACATCGAACGTGCCACCCCCGAGATCGAAAATGAGCAC 375902 Query 7576 GTTCGTATCG-TCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 ||| || ||| ||| | ||||| ||||||||||| ||||| || || ||||| | Sbjct 375901 GTTG----CGCTCGCCTTGGGCCTTCTTGTCGAGACCGTAGGCGATTGCAGCGGCCGTGG 375846 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 |||| || || ||||| || ||||| ||| | || || | || || ||||| || | Sbjct 375845 GTTCGTTGATGATACGCAGCACGTTCAAGCCGGAGATGGTACCGGCGTCCTTCGTTGCCT 375786 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | || || || ||||| |||||||| || || || | || || | ||||| || | Sbjct 375785 GACGCTGTGAGTCGTTGAAGTAGGCTGGCACGGTGATCACGGCATTAGTGACAGTCAGGC 375726 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | || || | || || | || ||||| || | |||||||| | |||||| | Sbjct 375725 CAAGGTAGGCCTCGGCCGTTTCCTTCATCTTCACCAAGACCATCGAGCTCACCTCTTCCG 375666 Query 7812 CCGCAAACTG-TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | | || ||||||||||| || | | ||||| ||| |||| || | ||| || Sbjct 375665 -GGAAGAATGACTTCGTTTCACCTTTGTACTGAACTTGAATTTTGGGCTTTCCGGCATCA 375607 Query 7871 C 7871 | Sbjct 375606 C 375606 Score = 86.0 bits (94), Expect = 8e-12 Identities = 131/186 (70%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| ||||||||||| || ||||| || || || || ||||| ||||| ||| | Sbjct 374977 GTGTTGTTGGGGTTCATCGCCACCTGGTTTTTGGCGGCATCACCGATGAGACGCTCAGTG 374918 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | | || || || || || || ||||| || || || ||||| || || || ||| Sbjct 374917 TCT---GTGAAGGCCACATAACTGGGCGTCGTGCGGTTACCCTGGTCATTAGCTATGATT 374861 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCG 8143 || || | | || | || |||||||| || || || ||||| ||||||||||| Sbjct 374860 TCGACCTTTCCATGCTGGAACACTCCGACGCAGGAGTAGGTAGTTCCCAAATCAATACCA 374801 Query 8144 ATTGCT 8149 |||||| Sbjct 374800 ATTGCT 374795 >seq85 Length=1970382 Score = 147 bits (162), Expect = 3e-30 Identities = 240/343 (70%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| ||||| || || | || ||||| || || || | ||||||||||| || || Sbjct 1448431 ATCGAAGTCTTCCCCTCCGAGATGCGTATCGCCAGCCGTGGACTTGACTTCAAAAATGCC 1448372 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || ||| | | | || || || ||||| || || |||| ||||||||| || || Sbjct 1448371 ATCCTCGATGGTGAGAATGGACACGTCGAACGTGCCGCCCCCCAAGTCAAAAATCAGGAC 1448312 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| | | | ||||| ||||| ||||| ||||| || || ||||| ||||| Sbjct 1448311 GTTTTTCTCGCCTGCGGTTTTCTTGTCGAGGCCGTAGGCGATGGCAGCGGCCGTGGGTTC 1448252 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || || || ||||| ||||||||| | || || | || ||||| || || || | Sbjct 1448251 GTTTATTATGCGCAAGAC-GTTCAGGCCGGATATGGTGCCGGCGTCTTTGGTTGCCTGCC 1448193 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || ||||| || || || || || |||| || |||| || || | || | Sbjct 1448192 GCTGGGAGTCGTTGAAATACGCTGGCACGGTTATTACGGCGTTGGTCACGGTACCGCCCA 1448133 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 | |||| || ||||| || |||| || || |||||||| Sbjct 1448132 GGTACGCCTCGGCGATCTCCCTCATCTTCACGAGCACCATCGA 1448090 Score = 86.0 bits (94), Expect = 8e-12 Identities = 136/192 (71%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||| |||||| ||||||||||||| || || || |||||||| || | ||| || Sbjct 1447846 AAAATTGTGTTGCTGGGGTTCATGGCGACCTGATTTTTGGCCGCGTCGCCCACAAGGCGC 1447787 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGC 8076 || || |||||||| ||||| || | |||| || || || || || |||||||| || Sbjct 1447786 TCGGTA---TCCGTAAAGGCGACATA-GCTGGGTGTTGTGCGGTTGCCCTGGTCGTTGGC 1447731 Query 8077 AATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136 || ||||| || ||| || | || || |||||||| || || || || | || Sbjct 1447730 GATTATTTCCACTTTTCCGTGCTGGAAAACACCCACGCACGAGTAGGTCGTGCCAAGGTC 1447671 Query 8137 AATACCGATTGC 8148 || || ||||| Sbjct 1447670 GATGCCTATTGC 1447659 >seq44 Length=2414680 Score = 140 bits (154), Expect = 4e-28 Identities = 255/370 (69%), Gaps = 5/370 (1%) Strand=Plus/Plus Query 7450 TCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA 7509 |||| |||||| ||||| ||||| | || || || || ||| || ||| ||||| Sbjct 1496602 TCTCTGATCGAAGTCTTCCCCACCGAGATGGGTGTCTCCATTGGTGGCAACGACCTCAAA 1496661 Query 7510 GATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 || || || || | | | || || || || ||||| |||| ||| || | Sbjct 1496662 GACTCCGTTGTCGATCGTGAGGAGGCTGACGTCGAAGGTGCCACCGCCCAAGTCGAAGAC 1496721 Query 7570 GAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 ||| |||||| | ||| | || || ||| ||||||||||| ||||| ||||| || || Sbjct 1496722 GAGAACGTTCTTCTCGCCTTCCTT---CTTGTCGAGACCGTAAGCGATGGCCGCGGCGGT 1496778 Query 7630 TGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 || || || || || | | ||| ||||| ||||| || || | || ||||| || | Sbjct 1496779 GGGCTCGTTGATGATTCTCATGAC-GTTCAAGCCAGATATGGTGCCGGCGTCTTTGGTGG 1496837 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 | |||| ||| | ||||| |||||||| || || ||||| || |||| ||||| || | Sbjct 1496838 CCTGTCTTTGGGCGTCGTTGAAGTAGGCGGGTACAGTTACAACGGCGTGGGTGACATTTT 1496897 Query 7749 TACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTT 7808 | || | || | |||||||| || ||||||||| | ||||| | || ||||| | Sbjct 1496898 TGCCCAAGTAGGCTTCCGCGACTTCCTTCATTTTGCCCAAGACCATGGCGGAGATCTCCT 1496957 Query 7809 CAGCCGCAAA 7818 | | ||||| Sbjct 1496958 CCGGGGCAAA 1496967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| || || || || ||||||| |||||| | | |||||||| Sbjct 1497083 CCAATCAGACGCTTGGCGTCGAACACGGTGTTTTGAGGGTTCGTAGTCAACTGGTTCTTG 1497142 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| ||||| ||| | || || || ||||||||||| || || | Sbjct 1497143 GCGGCATCGCCGATCAGACGCTCACCCTCTTGGGTGAAGGCGACGTACGAGGGCGTGATA 1497202 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTT 8099 || || || ||||| || || || ||||| || || |||||| Sbjct 1497203 CGGTTACCCTGGTCATTGGCGATGATTTCGACCCGACCGTTTT 1497245 >seq351 Length=680181 Score = 111 bits (122), Expect = 2e-19 Identities = 155/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||| || | ||| || || || |||||||| |||||||||||||| |||||||| Sbjct 83192 TCCGATGAGCCTCTTGGCGTCGAAGACTGTGTTGTTGGGGTTCATGGCGACCTGGTTCTT 83133 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCG 8054 || || || ||||| || || || | | ||||| || || || || | |||| || | Sbjct 83132 GGCGGCATCACCGATGAGTCGCTC---AGTGTCCGTGAAGGCAACATA-GCTGGGTGTTG 83077 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 | || || || || ||||| || || || || || | | |||||||| ||||||| Sbjct 83076 TGCGGTTGCCCTGATCGTTGGCGATGATCTCGACCTTCCCCTGCTGCCAGACACCGACGC 83017 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | || || || || || ||||||||||| || || Sbjct 83016 AAGAGTAGGTGGTACCCAAATCAATACCAATGGC 82983 >seq15 Length=2982310 Score = 82.4 bits (90), Expect = 1e-10 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 183338 GCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATA 183397 ||||| |||||||| | | ||||| ||||||||| || | || | |||||| Sbjct 1250119 GCGTCCTTACCACCTGTACCCCTCGTACCGAATTGACCAATGGGCTGTAGCAGATTAATG 1250178 Query 183398 TTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCA 183457 ||||| ||| |||||| ||||| || || || ||||| | || | || | |||| Sbjct 1250179 TTATTGCTGCCCACAAAATTCTGTGCCAAATTAACGATTGTGGCCGCGAGGGACATTTCA 1250238 Query 183458 CCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCA 183517 ||||| ||||| | |||| | |||| | | |||||| ||||||| ||| Sbjct 1250239 CCGTGATGATAGCCCGACATTTCAGCAACGGCACCACTCAGTTGCGCTACCTTCACTTCC 1250298 Query 183518 GATGTAAGATTCTTTGTGAAACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCA 183577 || |||| || | || || | |||||| ||||||| || |||||||||||| Sbjct 1250299 TTCTTATCATTCCTTTTAAAGCAAGTGTATAATACTTTTCTCTGTCCAGGTTTTAAACCA 1250358 Query 183578 TCT 183580 ||| Sbjct 1250359 TCT 1250361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635089571273800