Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 4e-15 seq15 93.3 5e-14 >seq2 Length=6207162 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 || |||||| ||||| |||||||| || ||| |||||| | ||| | || || Sbjct 5349428 AACGGCGATGGATGCTAAATTGCACACTGCCACTTCATCCGGTGAGGAGTATTGTACGAT 5349487 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 || |||||||||||| ||||| || || |||| ||||| || || |||| || Sbjct 5349488 CTCAGTACACAAGTTGCTGCTCTTGATGGTGCCCAGATTCTGCTGATTCGACTTTCGATT 5349547 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 ||| |||||||| |||||||| ||| | || || ||| ||| ||||| || || || Sbjct 5349548 GCAGTGGTCCTTGTAAAGCATGTACGGCATTCCAGTTTCCACCTGAGACTTCAGGATCGC 5349607 Query 106639 CTTCCACA 106646 | |||||| Sbjct 5349608 CGTCCACA 5349615 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 || |||||| ||||| |||||||| || ||| |||||| | ||| | || || Sbjct 5338129 AACGGCGATGGATGCTAAATTGCACACTGCCACTTCATCCGGTGAGGAGTATTGTACGAT 5338188 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 || |||||||||||| ||||| || || |||| ||||| || || |||| || Sbjct 5338189 CTCAGTACACAAGTTGCTGCTCTTGATGGTGCCCAGATTCTGCTGATTTGACTTTCGATT 5338248 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 ||| |||||||| |||||||| ||| | || || ||| ||| || || || || || Sbjct 5338249 GCAGTGGTCCTTGTAAAGCATGTACGGCATTCCAGTTTCCACCTGAGAATTCAGGATCGC 5338308 Query 106639 CTTCCACA 106646 | |||||| Sbjct 5338309 CGTCCACA 5338316 >seq15 Length=2982310 Score = 93.3 bits (102), Expect = 5e-14 Identities = 187/275 (68%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 168436 TAAGTTTTGTGAAAATGTACCTCGT-CTGAGAAGCATCCTTACCACCCATGAGACGCGTA 168494 ||||||| ||| ||||||| | | ||| | ||| ||||||||||| | | |||| Sbjct 1250087 TAAGTTTGGTGTAAATGTAACGAGCACTG-GCAGCGTCCTTACCACCTGTACCCCTCGTA 1250145 Query 168495 CCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCC 168554 || ||||||||| || | || || |||||||| || ||| | | | |||| Sbjct 1250146 CCGAATTGACCAATGGGCTGTAGCAGATTAATGTTATTGCTGCCCACAAAATTCTGTGCC 1250205 Query 168555 AACTTAACAATCGTGTCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTTGTCCGCG 168614 || ||||| || ||| |||| | ||| | |||||| || || || | ||| | || || Sbjct 1250206 AAATTAACGATTGTGGCCGCGAGGGACATTTCACCGTGATGATAGCCCGACATTTCAGCA 1250265 Query 168615 ACATATGCCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGAAGCAAGCA 168674 || | |||||| || ||||||| ||| | ||| |||| | | ||||||| Sbjct 1250266 ACGGCACCACTCAGTTGCGCTACCTTCACTTCCTTCTTATCATTCCTTTTAAAGCAAGTG 1250325 Query 168675 TACATCACTTTCCTCTGTGAAGGCTTGAGACCATC 168709 || | ||||| |||||| ||| || | |||||| Sbjct 1250326 TATAATACTTTTCTCTGTCCAGGTTTTAAACCATC 1250360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589940644431800