Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq434 116 2e-21 seq4393 109 4e-19 seq26 91.5 1e-13 seq30 82.4 5e-11 >seq434 Length=1254451 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 ||||| || |||| |||| ||||| ||||| || ||||| ||||| | || |||| Sbjct 843873 AAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTGCGACCATCT 843932 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || ||||| || || ||||| || |||||||| |||||| | || | || || ||||| Sbjct 843933 TCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCTTTGTCT 843992 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || |||||| | | || | || || || || || | ||| || || Sbjct 843993 TGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCGTC 844052 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| ||||||||||| |||||||||||||| Sbjct 844053 TTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| |||| ||| || ||||||||||||||||| || || | || |||| Sbjct 844100 CAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATC 844159 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || || || || || | |||||||| ||| | || | ||||| ||||| Sbjct 844160 TTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTC 844219 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || || |||||| | | |||| ||| || || || || | ||| || || Sbjct 844220 TTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACCTCTAAGGTGATCGT 844279 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| ||||| ||||| |||||||||||||| || Sbjct 844280 CTTTCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 844315 >seq4393 Length=1805 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| |||| ||| || || |||||||| |||||||| || | || | || Sbjct 1158 CAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTGCGCCCGTC 1217 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| ||||||||||| || | || || || || | || | || || || || Sbjct 1218 TTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATC 1277 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| || |||||| | | || | ||| ||||||||| || | || ||||| Sbjct 1278 TTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATGGT 1337 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || ||||||||||| |||||||||||||| Sbjct 1338 TTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| |||||||| | | ||| |||| || || || || || ||||| Sbjct 268 TCTTTCTGAATGTTGTAGTCCGACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAA 327 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | |||||||| ||| | || | || || ||||| ||| || |||||| | Sbjct 328 ATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTTGTCTTGAATTTTAGCCTTGACGTTT 387 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || |||||| || || | |||||| ||||| || || ||||| || || Sbjct 388 TCAATCGTATCTGAGGCCTCGACTTCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACG 447 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 448 AAGATCTGCATA 459 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| |||| ||| || ||||||||||||||||| || || | || |||| Sbjct 18 CAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATC 77 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || || ||||| || |||||||| |||||| | || | || || || || Sbjct 78 TTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTATC 137 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || || |||||| | | || | ||| ||||| || || | ||| || || Sbjct 138 CTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATAGT 197 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || ||||| || ||||| || ||||| Sbjct 198 TTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||||||||| || || || | || |||| || ||||| || || || || Sbjct 496 TCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAAA 555 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| ||| | || | || || ||||| ||| || || || | Sbjct 556 ATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTT 615 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||||| || | || ||||||||||| ||||||||||| ||| Sbjct 616 TCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGACA 675 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 676 AAGATCTGCAT 686 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| |||||||||||||| ||||| | || |||| || |||||||| || || || Sbjct 952 TCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAA 1011 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| || | || | || || || || ||| || |||||| || Sbjct 1012 ATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGAATTTTAGCTTTGAC--AT 1069 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || |||||| || || | || || ||||| || || ||||| || | Sbjct 1070 TCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAA 1129 Query 34969 CAAAGATCTGCAT 34981 |||| || ||||| Sbjct 1130 CAAAAATTTGCAT 1142 >seq26 Length=4002310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | ||| |||||||||||| ||||| || |||||| ||| | | || || Sbjct 1471317 AACCAGGTGGAGTGTTGATTCTTTCTGAATATTATAATCTGAAAGGGTTCTTCCGTCTTC 1471376 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| || ||||| || || || || |||||||||||| | || | ||||| ||||| Sbjct 1471377 CAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCTGGAGGAATGCCCTCTTTGTCTTG 1471436 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||| ||| | | || | || || ||||| || | ||| || || || Sbjct 1471437 AATTTTTGCTTTTACGTTTTCAATTGTATCTGATGCTTCAACCTCTAAGGTAATTGTCTT 1471496 Query 34952 TCC 34954 ||| Sbjct 1471497 TCC 1471499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 34776 AAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGC 34835 ||||||| ||| ||| ||||||||||| ||||| ||||| | | | | || || | | Sbjct 1472160 AAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAAC 1472219 Query 34836 TGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATC 34895 || || || ||||| || || || ||||||||| | || | || || ||||| |||| Sbjct 1472220 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATC 1472279 Query 34896 TTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 || ||||| || || || | ||| ||||| || || | || ||||| || | Sbjct 1472280 TTGGCCTTGAC--ATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGC 1472337 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || || ||||||||||| Sbjct 1472338 CAGTTAAAGTTTTAACGAAGATCTGCAT 1472365 >seq30 Length=3281913 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| ||||| ||||| ||||| | || |||| || |||||||| ||||| || | Sbjct 593720 CTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAA 593779 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | | ||||||||| | || | ||||||||||| ||||| || ||| Sbjct 593780 TCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTCT 593839 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || ||| || || || | ||| || || || ||||| || || ||||| | Sbjct 593840 CAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACGA 593899 Query 34972 AGATCTGCAT 34981 | || ||||| Sbjct 593900 AAATTTGCAT 593909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324612057009960