Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq203 167 3e-36 >seq203 Length=886859 Score = 167 bits (184), Expect = 3e-36 Identities = 225/310 (73%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 ||| |||| |||| || ||||| || || | || ||| ||||||||||| || || || Sbjct 356986 CCAGTATTTTTTTTTAGATCAAGGAATTCAAATACATCGGCATGCCATGGCTCCAAGTAA 357045 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 || || | | | ||||||| || |||||||| ||||| | ||| | ||| |||||||| Sbjct 357046 ATGGCAAATGCCCCTGGTCTCTTGTTACCTCCCTGATCAACATAGCAGGCTGTATTGTTG 357105 Query 48393 TAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTT 48452 ||||||||| |||||| || | |||||||| ||||||||||| || | ||| | | Sbjct 357106 AAAACTCTTAGCATTGGAACTAACCCATTTGAAATACCATTGGTACCAGCAATTTTGGTG 357165 Query 48453 CCACTAGCTCTTATATT-ACTA-ATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 ||| | || | || || || | || | ||| || || ||||| |||| |||| Sbjct 357166 CCAGTCGCACGAATGTTGTGTACACTG--AGACCAATGCCTCCTGCTGATTTACTAATTA 357223 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| | ||| | |||||| |||||||||| ||||| || ||| |||| ||| | Sbjct 357224 CGGCACATCTTTTTAAAGTATCAAAAATTCCTTCGATACTGTCGTCTGTCATTGTTAGCA 357283 Query 48571 GAAAACAACT 48580 ||||||||| Sbjct 357284 AAAAACAACT 357293 Score = 111 bits (122), Expect = 2e-19 Identities = 122/161 (76%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 47279 CCAAAGTTTTCGTTCAGTTAATGTTTTTAAAAGATGAGGATTAACAATTTGAAATTCTCC 47338 |||||| | | ||||||| ||| || ||||||||||||||||| || ||||| || Sbjct 355759 CCAAAGACCTAGATCAGTTAGATCTTTCAAGAGATGAGGATTAACAATCTGGAATTCCCC 355818 Query 47339 AGATAGTAC---TCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATT 47395 || ||||| ||| || || |||||||| ||||||||||| | || |||||||| Sbjct 355819 GGAAAGTACGCGTCTTTGG---TAGATATTACTCGTATATGGTTCAACTGACTCATTATT 355875 Query 47396 TCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAA 47436 |||| |||||| || || |||||||| ||||| | |||| Sbjct 355876 GCCAAGAATTTGGGCCGTCGATGCTGTTGGCATCGGAGCAA 355916 Score = 104 bits (114), Expect = 3e-17 Identities = 302/458 (66%), Gaps = 10/458 (2%) Strand=Plus/Plus Query 47825 AATTTCTCTTAATTTATTAAAATC---AAACTTGTTAT--TTA-TAACAAACCTATTAAG 47878 || |||| |||||||| |||||| | |||| |||| | | | | ||| | || | Sbjct 356467 AACTTCTTTTAATTTACCAAAATCGTAAGACTTTTTATCGTCACTGATGAACATGTTGAC 356526 Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA-TATTGTATTATTT 47937 || || ||||||| ||| || || ||||| |||| || | || | || || | ||| | Sbjct 356527 GGCAATGGATGCTAAATTGCAAACTGCTACTTCATCCGG-TGAGGAGTACTGCACTATCT 356585 Query 47938 CAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTAC 47997 | | ||| | |||| | | |||| || |||| |||||| ||||| ||| | Sbjct 356586 CGGTACACAAGTTACTGCTTCTGATGGTGCCCAGATTTTGCTGATTCGACTTGCGGTTGC 356645 Query 47998 ATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATT 48057 | ||| |||||||||||| |||| ||||||||||| | ||||| | | |||| Sbjct 356646 AGTGGTCTTTGTAAAGCATATAAGGCGTTCCAGTTTCAACTTGAGACTTCAGAATAGCCG 356705 Query 48058 TCCAAACAGTCCTAGCCTTTA-TAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 |||| | || || || | | | | || | ||| | | | ||| ||| | || Sbjct 356706 TCCACAGCGTTCTGGCATCGACTTGCTTCT-TGTATTTTTGCCCCTCTTCATATGTGGTG 356764 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 || || || ||||| ||| | || | || | || |||||||| || || |||||| Sbjct 356765 TACAATTTTTCAAACTCAGCGCCCCAAACGTCGGGCAATCCAGGACACTCTTTGGGACAC 356824 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 || | ||| | |||| |||| ||||| ||| || | ||||| ||||| ||| Sbjct 356825 ATGAGACTCCACTTTTCATTATTTAAAACTCTTTGCATGAACAAGTCTGGGATCCACAGA 356884 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274 || ||||| |||||| | ||| | ||||| || || Sbjct 356885 GCGTAAAATAGATCCCTTGCTCTACGCTCTTCTTTACC 356922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562070541469800