Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4393 132 4e-25 seq26 118 9e-21 seq165 100 2e-15 seq351 91.5 1e-12 seq135 86.0 5e-11 >seq4393 Length=1805 Score = 132 bits (146), Expect = 4e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || | ||||||||| ||| |||| ||| ||||| || | ||| || Sbjct 1152 GAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTG--AATGTTGTAGTCCGATAGTGTG 1209 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||||| || |||||||||||||| | ||| || |||||||||||||| ||| Sbjct 1210 CGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCT 1269 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 ||||||||||||||||| || || ||||||||||||| | | ||| || Sbjct 1270 TCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGT 1329 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||| ||||| ||||| ||||| || || ||||| Sbjct 1330 GTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 131 bits (144), Expect = 1e-24 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || |||||||||||||| || ||| ||||| ||| || || || | || || | Sbjct 925 AGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGC 984 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| || ||||| || || ||||| | | |||||||| ||||| || |||||| Sbjct 985 CCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCT 1044 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 ||||| |||||||| ||| || |||||| || || | | | | | ||| ||||| Sbjct 1045 TTATCCTGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAG-GCCTCGACTTCTAGAGT 1103 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||||||||||||||||||||| ||||||||||| Sbjct 1104 GATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 120 bits (132), Expect = 2e-21 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | ||| ||||| |||||| ||||| ||| ||||| || | | || | | Sbjct 697 AGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGT 756 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| ||||| || || |||||||| | | ||||||||| ||||| || || ||| Sbjct 757 CCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCT 816 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || || || |||||| ||| || |||||||| |||| | | ||| || || Sbjct 817 TTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTG 876 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| |||||||||||||| || || ||||||||| Sbjct 877 ATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCATA 915 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| | || | ||||||||| || || ||| || || || | || || | Sbjct 12 GAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACG 71 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| || || || || |||||||| |||| ||| || || |||||||||||||| Sbjct 72 GCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTC 131 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434 |||||| || ||||| || || |||||||| |||| | || ||| | | Sbjct 132 TTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGAC-TTCTAAGG 190 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||| ||||||||||| || ||||||||||| Sbjct 191 TAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 Score = 104 bits (114), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || || |||||||| || ||| |||||| |||||| || || | || || | Sbjct 1381 AGTCGAAGCACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGTCTGAAAGTGTACGC 1440 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| || ||||| || || ||||| | | |||||||| ||||| || || ||| Sbjct 1441 CCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCT 1500 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || ||||| |||||| ||| || ||||| || || | | | | | ||| || || Sbjct 1501 TTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCTGAG-GCTTCGACTTCTAGCGT 1559 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| || || || |||||||| ||||||||||| Sbjct 1560 AATTGTTTTTCCTGTTAGGGTTTTAACAAAAATTTGCAT 1598 Score = 102 bits (112), Expect = 7e-16 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| ||||| || || |||||||| | | ||||||||| ||||| || |||||||| Sbjct 303 ATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTT 362 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||||||||||| || || ||||| ||||| | | | | | ||| || || | Sbjct 363 GTCTTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAG-GCCTCGACTTCTAGGGTTA 421 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| ||||| |||||||||||||| || |||||| Sbjct 422 TTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCATA 459 Score = 89.7 bits (98), Expect = 4e-12 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || |||||||||||||| || ||| || || ||| || ||||||| ||||| | Sbjct 469 AGTCGGAGTACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGACAGAGTACGC 528 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || || || || ||||| | | |||||||| || || || |||||| Sbjct 529 CCATCCTCGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCT 588 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC---AGTGTGAGTACATTCGAGA 563433 || ||||||||||| || || ||||||||||| || | | || || || Sbjct 589 TTGTCTTGAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCA--AC-CTCAAGT 645 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||| ||||| ||||| || || || || ||||| Sbjct 646 GTGATGGTTTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 686 >seq26 Length=4002310 Score = 118 bits (130), Expect = 9e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || |||||||| || || |||||| |||||||| || | | ||||| Sbjct 1457962 AGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGACAAGGTTCTA 1458021 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| ||||||||||| ||||| || || | ||||| ||||| ||||| ||||| Sbjct 1458022 CCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATACCTTCC 1458081 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 |||||||| ||||| || || ||| || ||||| | | || | | || || Sbjct 1458082 TTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGACCTCCAAG-GT 1458140 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||||||||| | |||||||| ||||||||||| Sbjct 1458141 AATGGTTTTACCAGTCAATGTTTTAACAAAAATTTGCAT 1458179 Score = 118 bits (130), Expect = 9e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || || || || || |||||| |||||| ||||| | || |||||| Sbjct 1471309 AGACGGAGAACCAGGTGGAGTGTTGATTCTTTCTGAATATTATAATCTGAAAGGGTTCTT 1471368 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| ||||| ||||| || ||||| || | |||||| || |||||||| || ||| Sbjct 1471369 CCGTCTTCCAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCTGGAGGAATGCCCTCT 1471428 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 || |||||||||||| |||||| ||||||||||| Sbjct 1471429 TTGTCTTGAATTTTTGCTTTTACGTTTTCAATTGTATC 1471466 Score = 96.9 bits (106), Expect = 3e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || || || || || ||| || ||| |||||||||| || || ||| Sbjct 1458418 AGACGCAGAACCAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCAGAAAGCGTCCTT 1458477 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | || || || ||||| || || | ||||| || |||||||| || ||| Sbjct 1458478 CCATCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCT 1458537 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 || |||||||||||| |||||| ||||||||||| Sbjct 1458538 TTGTCTTGAATTTTTGCTTTTACGTTTTCAATTGTATC 1458575 Score = 86.0 bits (94), Expect = 5e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 563272 TGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGT 563331 |||||||| ||| || ||| ||||| |||| || || ||| ||||| | || Sbjct 1472163 TGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAACTGC 1472222 Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || || | ||||| || || || || |||||||| |||||||| || Sbjct 1472223 TTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATCTTG 1472282 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGT 563450 || || |||||| ||||||| || | | || | ||||| || || ||||| Sbjct 1472283 GCCTTGACATTCTCAATGGTATCAGA-TGCCTCGACCTCTAAAGTAATGGTCTTGCCAGT 1472341 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 | |||||||||||| || ||||| Sbjct 1472342 TAAAGTTTTAACGAAGATCTGCAT 1472365 >seq165 Length=1028735 Score = 100 bits (110), Expect = 2e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||| || || || ||||| || || ||| | |||||||| ||||| | Sbjct 586714 ATGCCGTTATCACTGTGCCCGCCTACTTTAACGATTCCCAAAGACAAGCTACAAAAGACG 586655 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||||| || | || || || || ||||| | ||||| ||||||||||| ||||||| Sbjct 586654 CTGGACAAATCTCCGGTCTGAACGTGCTTCGAGTCATCAACGAACCTACTGCGGCTGCAC 586595 Query 550518 TTGCATATGG 550527 |||| || || Sbjct 586594 TTGCCTACGG 586585 >seq351 Length=680181 Score = 91.5 bits (100), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 550337 TCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACG 550396 || ||||| | | ||| ||||| |||||||| || | | | || || |||| | | Sbjct 83689 TCGATGGTCCTGACGAAGATGAAGGAAACAGCCGAAGCGTATTTAGGCCAGAAAGTGAGG 83748 Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 || || || || || || || || || || ||||||||||| || || || || || || Sbjct 83749 GACGCGGTCATTACGGTGCCCGCGTACTTCAATGACTCACAGCGCCAGGCCACCAAGGAC 83808 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 |||||| || || || || |||||||| | || || || || || || || || || Sbjct 83809 GCTGGAGCCATAGCAGGCCTGAATGTTCTCAGGATCATTAACGAGCCCACAGCCGCAGCT 83868 Query 550517 CTTGCATATGGACTTGATAA 550536 || || || || |||||||| Sbjct 83869 CTCGCCTACGGCCTTGATAA 83888 >seq135 Length=1286967 Score = 86.0 bits (94), Expect = 5e-11 Identities = 185/273 (68%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 368794 GTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTT 368853 || || || ||||||||||| || ||||| ||||| || | || | || ||||| || Sbjct 1252642 GTCTTTGACTGCTGGTTTGAGTCTGGTTCGATGCCGTACGCGCAGGTGCACTATCCCTTC 1252583 Query 368854 GATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCA 368913 || | ||| | ||||| | |||| || | | || |||||| | || | Sbjct 1252582 GAGCGAACCAAAGAGTTTGA-----AGAAAGCTTCCCAG-CGGACTTTGTAGCTGAGGGA 1252529 Query 368914 ATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGAT 368973 || || ||||| ||||| ||||| || || ||||| || |||| || || | |||| | Sbjct 1252528 ATCGACCAAACCCGTGGCTGGTTCTACACACTATTGGTCATATCGACGGCCCTGTTCGGT 1252469 Query 368974 AAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATG-CATCTGATGGTCAAAA 369032 || || |||| ||||| | |||| | ||| | || | || | || ||||| ||||| Sbjct 1252468 AAGCCTCCTTTCAAAAACCTCATAGCCAATGG-ACTGATCTTGGCTTCGGATGGACAAAA 1252410 Query 369033 GATGTCAAAAAGTAAGGGTAATTATTCCGATCC 369065 |||||| || |||| || || ||||||| Sbjct 1252409 GATGTCGAAGCGTAAAAAAAACTACCCCGATCC 1252377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029008043843050