Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq51 145 6e-30 seq64 82.4 6e-11 >seq51 Length=2226466 Score = 145 bits (160), Expect = 6e-30 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||||| ||| | || || || | | ||||||||| |||||||| || || || || Sbjct 309718 CATGTCCACGTATTTGGCGCCAAAGTATCGCCACTGGAAGCCGTACACGGGGCCAAGATC 309659 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||| || || ||| | |||||| | |||||| || || | ||| |||||||||| Sbjct 309658 TCCTTCCTCTCTGCCCGTGAAGCCGCAGATGTCCAGGAATTCCCGGGATGCGTTGGCGTC 309599 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30329 |||||| || | || || |||| || ||||||| ||| || || ||||||| |||||| Sbjct 309598 CCAGATTTTAATACCTTTGGCGGACAGTTCTTTGGCGTTGGTCGAGCCTCTGATGAACCA 309539 Query 30330 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30387 | ||||||||| | || | ||||||||| | ||| ||||| || ||||||||| Sbjct 309538 GAACAGCTCCTCGGCCACTCCGCGCCAAAAGACGCGCTTCGTCGTCAGTAGGGGAAAC 309481 Score = 123 bits (136), Expect = 2e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934 ||||||||||| || | | || || || ||||| |||||||||||| ||||| ||| Sbjct 310121 GTGACGTGAGCTATGAGACAAGTCAGCAGGGAGTAAGAGGCGATGTTAAACGGTACGCCG 310062 Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994 || |||||||| || | |||||||| || |||||||||| ||| || || |||||| Sbjct 310061 AGGCCCATGTCACCGGCTCTCTGGTACAGGTGACACGAGACCTCGCCACCGTCCACGTAG 310002 Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30054 ||||| | | |||||| ||||| |||||||| ||| | || |||||||| Sbjct 310001 AACTGGGCGAGCGAGTGGCAGGGAGGCAGAGCCATCAGGGGAATATCAACCGGGTTCCAC 309942 Query 30055 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 | || | ||| || | |||||| | ||||| |||| || Sbjct 309941 GAGCTGATGATTATTCTCCTGTCGTTGGGGTTCGTCCTTAT 309901 Score = 118 bits (130), Expect = 9e-22 Identities = 169/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||||| |||| || || ||||| | |||||| || || || || || || | || Sbjct 126869 CATGTCCACATACTTGGCGCCAAAATGTCGCCACTGAAAGCCATATACAGGACCTAAATC 126810 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||| ||||| |||| | ||| ||||||||||| | | ||||| ||||| || Sbjct 126809 TCCTTCTTCTCTGTTAGTTAGGCCAAGATTGTCCAAAAATGCACGTGAACCATTGGCATC 126750 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30329 ||| || || || || ||||| || | |||||||| ||||| || ||||| | ||||| Sbjct 126749 CCAAATGTTGACGCCTTTCTCTGATAACTCTTTGGCATTTGTTGAGCCTCTAATAAACCA 126690 Query 30330 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 30385 ||||||||||| || || | |||| ||||| | || || || || || ||||| Sbjct 126689 GAGCAGCTCCTCAACTACTCCTCTCCAGAAGACGCGTTTTGTTGTCAGTAGCGGGAA 126633 >seq64 Length=1863977 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 52051 AGATGGGCGACAAGTTTGCGTCG-TTCACGGCGCAAAAGGGGACGTGCGG--AGCCGTCC 52107 |||| || ||||||||||||||| |||||| |||||||| || || || || || | Sbjct 1819196 AGATCGGTGACAAGTTTGCGTCGCGTCACGG-TCAAAAGGGCACCTGTGGCATGCTGTAC 1819138 Query 52108 TGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 52167 || |||||||||||||| ||| | || || | || ||| |||||||||| | Sbjct 1819137 CGA--CAGGAGGACATGCCGTTCACCTGCGAGGGTATCACCCCGGACATCATCATCAATC 1819080 Query 52168 CCCACGCCTTTCCATCCAGGATGAC 52192 |||||||| |||| ||| | ||||| Sbjct 1819079 CCCACGCCATTCCGTCCCGCATGAC 1819055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408590483752985