Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq434 100 2e-16 seq350 93.3 3e-14 seq4393 87.8 1e-12 seq26 87.8 1e-12 >seq434 Length=1254451 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || ||||| || ||| |||||||||||||||||| || || || | ||| Sbjct 843867 AGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTGCGA 843926 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| |||||||| ||||| || | || | || || Sbjct 843927 CCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCT 843986 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || || | | | || || || |||||||| | || Sbjct 843987 TTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTG 844046 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || | ||| || ||||| |||||||| Sbjct 844047 ATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 >seq350 Length=778331 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||| ||||||||||| || ||| | || | || || | ||| || || || || | Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 ||| | ||| || || | |||| ||| || ||||| ||||| ||| ||| Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || || ||||| ||||| | || |||||||| ||||| | |||||||| | Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 48757 AAATCTGCATC 48767 ||||||||||| Sbjct 635070 AAATCTGCATC 635060 >seq4393 Length=1805 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| || || || || | || | || || | ||| ||||| || || Sbjct 1408 TCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAA 1467 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||| ||||| | || | ||||| ||||| || ||| ||| ||| Sbjct 1468 ATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTT 1527 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| || || || || | |||||| |||||||| || | ||||| ||| Sbjct 1528 TCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAACA 1587 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 1588 AAAATTTGCAT 1598 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || | |||||| || |||||||||||| ||||| || || | | || Sbjct 697 AGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGT 756 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||| || ||||| |||| || || ||||| | || | ||||| Sbjct 757 CCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCT 816 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| ||| ||| | | | || || ||||| || |||| || Sbjct 817 TTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTG 876 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||||||||| || ||||| Sbjct 877 ATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 >seq26 Length=4002310 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || || || || ||||| ||||| ||||| ||| ||| Sbjct 1458190 AGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTG 1458249 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||| ||||| || || |||| ||||| || |||| || | ||||| Sbjct 1458250 CCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGGATACCCTCT 1458309 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || ||| || | | || || || ||||| ||||| | || Sbjct 1458310 TTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGACCTCTAGGGTG 1458369 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || |||||||||||||| Sbjct 1458370 ATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380912320623735