Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq26 102 7e-17 seq4393 91.5 1e-13 >seq26 Length=4002310 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| |||||||| || ||||||||||||||| || ||| |||| Sbjct 1458180 AATGCAAATTTTTGTTAAAACATTGACTGGTAAAACCATTACCTTGGAGGTCGAAGCTTC 1458121 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || ||||| |||||| || || || || | ||| || || Sbjct 1458120 AGATACCATCGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGTATTCCCCCTGACCA 1458061 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || |||||||| || |||||| | |||||| || ||| || | || || || Sbjct 1458060 GCAGCGTCTCATCTTTGCTGGAAAACAACTCGAAGATGGTAGAACCTTGTCAGACTACAA 1458001 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 || || |||||||| || || || Sbjct 1458000 TATCCAGAAAGAATCCACACTACA 1457977 >seq4393 Length=1805 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || |||||||| |||||| ||| || |||| Sbjct 230 ATGCAAATTTTTGTAAAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTCT 171 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| |||||| || ||||| ||| | || ||| ||| Sbjct 170 GACACAATTGAAAACGTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCAA 111 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||| || ||||| ||||| || | |||||| || || |||| |||||| Sbjct 110 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTATAAC 51 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || || || || || |||| || | | |||||||| || Sbjct 50 ATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGGCAT 1 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || || |||||||| || ||| || | || Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| ||||||| ||||||||||| | || |||||| Sbjct 854 GACACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATCAG 795 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || ||||| ||||| ||| | |||||| || || | || || ||| Sbjct 794 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 735 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| ||||| || || | |||||| | | |||||||| || Sbjct 734 ATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGGCAT 685 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| |||| || ||||| ||||| ||| ||| | ||| Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || |||| ||||||| ||||||||||| | || |||||| Sbjct 1538 GACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 1479 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 ||| | | || || || || ||||| | |||||| | | ||| | | || |||| Sbjct 1478 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTT--CAGACTATA 1421 Query 28732 ACATTCAAAAAGAATCTACTCTGCA 28756 | ||||||||||||||||| || || Sbjct 1420 ATATTCAAAAAGAATCTACACTCCA 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425376569738655