Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq26 125 5e-23 seq4393 120 2e-21 seq44 100 2e-15 seq452 96.9 2e-14 seq434 96.9 2e-14 >seq26 Length=4002310 Score = 125 bits (138), Expect = 5e-23 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || || ||||| |||||| || ||||||||| | || || Sbjct 1471305 ACGAAGACGGAGAACCAGGTGGAGTGTTGATTCTTTCTGAATATTATAATCTGAAAGGGT 1471364 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| ||||| ||||||||||| || ||||| |||||||| || || |||||||| || Sbjct 1471365 TCTTCCGTCTTCCAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCTGGAGGAATGCC 1471424 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 || ||||||||||| ||| ||| || |||||| ||||| Sbjct 1471425 CTCTTTGTCTTGAATTTTTGCTTTTACGTTTTCAATTGTATC 1471466 Score = 120 bits (132), Expect = 2e-21 Identities = 161/225 (72%), Gaps = 12/225 (5%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || |||||||| ||||| |||||| | ||| || || | | || Sbjct 1457958 ACGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGACAAGGT 1458017 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| |||||| ||||| ||||||||||| || ||||| || || ||||| ||||| || Sbjct 1458018 TCTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATACC 1458077 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT----- 480725 |||||| ||||| || || |||||| || || ||||| ||||| | Sbjct 1458078 TTCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATC------TGAAGCTTCGAC 1458131 Query 480726 -TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | |||||| |||||||| || | || ||||| |||||||| Sbjct 1458132 CTCCAAGGTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTG 1458176 Score = 98.7 bits (108), Expect = 6e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || || || ||||| ||| || || || ||||||| || || Sbjct 1458414 ACGAAGACGCAGAACCAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCAGAAAGCGT 1458473 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || |||||| | ||||| |||||||| || ||||| || || || |||||||| || Sbjct 1458474 CCTTCCATCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCC 1458533 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 || ||||||||||| ||| ||| || |||||| ||||| Sbjct 1458534 CTCTTTGTCTTGAATTTTTGCTTTTACGTTTTCAATTGTATC 1458575 >seq4393 Length=1805 Score = 120 bits (132), Expect = 2e-21 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| |||||||||||||| || ||| || || || |||||||||| ||||| Sbjct 465 ACGAAGTCGGAGTACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGACAGAGT 524 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||| ||||| ||||| | ||| || ||||| || || || || Sbjct 525 ACGCCCATCCTCGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGGATACC 584 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| ||||||||||| || || ||| |||||| ||||| | | | ||||| Sbjct 585 TTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCAACCTCAAG 644 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||||||||| || || || || Sbjct 645 TGTGATGGTTTTTCCAGTGAGAGTCTTGACAAAGATCTG 683 Score = 116 bits (128), Expect = 2e-20 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| |||||||||||||| |||||| ||||| || ||||| || | || || Sbjct 921 ACGAAGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGT 980 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || || || ||||| ||||| | ||| || ||||| ||||| || || Sbjct 981 ACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACC 1040 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || || ||||| || ||||||| ||||| || || | | ||| || Sbjct 1041 TTCTTTATCCTGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAG 1100 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| || ||||| ||||| |||||||| Sbjct 1101 AGTGATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTG 1139 Score = 114 bits (126), Expect = 8e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| || | || || | | |||||| || ||||| ||||||||||| || |||||| Sbjct 52 TTATAGTCGGACAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGT 111 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || |||||||||||||| || || || || || ||||| |||||| || ||| Sbjct 112 TGGTCTGGAGGAATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCA 171 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | ||| | |||||||||||||||||| ||||| || || |||||||| Sbjct 172 GAAGCCTCGA-CTTCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTG 227 Score = 113 bits (124), Expect = 3e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 |||||||| |||||||| |||||||| | | ||||||||||||||||| ||||| || Sbjct 1216 TCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTA 1275 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 |||||||| || ||||| |||||| ||||||| | | ||| || || || Sbjct 1276 TCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATG 1335 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || |||||||||||||| || || || Sbjct 1336 GTTTTGCCAGTGAGAGTCTTAACAAAGATCTG 1367 Score = 109 bits (120), Expect = 4e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| ||||||||||| | |||||| ||||| ||||| || ||||| || Sbjct 303 ATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTT 362 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||| || ||||| |||||| ||||| | | ||| ||||| || Sbjct 363 GTCTTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGACTTCTAGGGTTAT 422 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || ||||| |||||||| || || Sbjct 423 TGTTTTGCCAGTTAGAGTTTTAACGAAGATCTG 455 Score = 109 bits (120), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| | ||| ||||| || ||| ||||| || || || || | | || Sbjct 694 CGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTA 753 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| |||||||| ||||||||||| | |||||| ||||| ||||| || || Sbjct 754 CGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCC 813 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||| || || ||| ||||||| |||||| || |||| | | ||| || Sbjct 814 TCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGT 873 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || ||||| || || || ||||| Sbjct 874 GTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTG 911 >seq44 Length=2414680 Score = 100 bits (110), Expect = 2e-15 Identities = 195/288 (68%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 475874 ATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATG 475933 || || ||| | ||||| | |||||| | | ||| | |||||||||||||| | ||| Sbjct 1496058 ATCGTCCTTCTCGACGTCAACCCACTTACCATGGGTATCGAAACAGTTGGAGGTGTCATG 1495999 Query 475934 ACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACT 475993 || || || || |||||| || || || ||||||||| | | || || ||| Sbjct 1495998 ACCAAGCTCATCCCCAGAAACACCGTGATTCCGACCAAAAAATCCCAGATCTTCTCTACT 1495939 Query 475994 TATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACT 476053 || || || || || || ||||| || ||||||| |||||| | | || Sbjct 1495938 GCCTCCGACAACCAGCACACCGTCACCATTCAGGTCTTTGAGGGTGAACGCCCCATGACC 1495879 Query 476054 AAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113 ||||| || || ||||| | ||| |||| |||||||| || || ||| |||| Sbjct 1495878 AAAGACAACCACTTGCTTGGCAAGTTTGATCTCACTGGTATTCCACCCGCGCCCCGAGGT 1495819 Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTT 476161 ||||||| || ||||| || || || || || || || ||||| ||| Sbjct 1495818 ATTCCTCAGATCGAAGTCACCTTCGAAATCGACGCCAACGGTATCCTT 1495771 >seq452 Length=772944 Score = 96.9 bits (106), Expect = 2e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 |||||||| || | ||||||||||| ||| ||||||| || | ||| || Sbjct 376864 GAAGGTGAGCGAGCTATGACTAAAGATAACAACTTGCTTGGAAAGTTCGAGCTTAGCGGA 376923 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 |||||||||||||| | || || || ||||| ||||| || ||||||||||| || || Sbjct 376924 ATTCCTCCTGCTCCTCGTGGTGTACCACAAATCGAAGTCACCTTTGATATTGACGCCAAC 376983 Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTATT 476212 ||||| || || || ||||| ||| ||||| | |||| || || || || || Sbjct 376984 GGTATCCTCAACGTCTCTGCTGTTGACAAATCGACGGGCAAGGAGAACAAGATCACCATC 377043 Query 476213 ACAAAC 476218 |||||| Sbjct 377044 ACAAAC 377049 >seq434 Length=1254451 Score = 96.9 bits (106), Expect = 2e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| || | || | ||||||||| ||||| || ||| || || | || || Sbjct 843864 CGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTG 843923 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || ||||| ||||||||||| || |||||||| || ||||| || ||| Sbjct 843924 CGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCT 843983 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||||||||| || ||||| |||||| ||||| | | || | | Sbjct 843984 TCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAG 844043 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||||||||| || || || || Sbjct 844044 GTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTG 844081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267945637530860