Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4393 159 6e-34 seq434 89.7 9e-13 >seq4393 Length=1805 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||| ||||| ||||| | ||||| |||||| ||| ||| Sbjct 907 ATTTGCATACCACCACGAAGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTA 966 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| || | ||||| || || ||||| || | ||| ||| Sbjct 967 TAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGA 1026 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||||||||| || ||||| | ||| | ||| ||| || ||||| Sbjct 1027 TCGGGAGGGATACCTTCTTTATCCTGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAG 1086 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||||||||| || |||||||| || || ||||| ||||| |||||||| Sbjct 1087 GCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | | |||||| || ||||| | ||||| ||||| |||||||||||| Sbjct 1369 ATGCCACCACGAAGTCGAAGCACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGTCT 1428 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||||| || || ||||| || | ||| ||||| ||| Sbjct 1429 GAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGA 1488 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| ||||| | ||| | |||| ||| || || || | || Sbjct 1489 GGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCTGAGGCTTCG 1548 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct 1549 ACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAACAAAAATTTGCAT 1598 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || |||| | || | |||| ||| | || | ||| || ||| || Sbjct 1134 AATTTGCATGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTT 1193 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| |||| || | || || | || |||||||||||||| ||||||||||| Sbjct 1194 GTAGTCCGATAGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTG 1253 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || |||||||||||||| ||||||| || | ||| ||| ||||| || Sbjct 1254 ATCAGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGA 1313 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| || || || ||||| || || || || || ||||| || ||||| Sbjct 1314 GGCCTCAACTTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||| | || | ||| || ||| ||||||||||| | || | ||| || Sbjct 22 ACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCTTCG 81 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || |||||||| | || ||||| || ||||| |||||||||||||| || Sbjct 82 AGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTATCCTGG 141 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | || | ||| ||| || || |||| ||| ||||||| || ||||||||| Sbjct 142 ATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATAGTTTTA 201 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||||||||| |||||||| Sbjct 202 CCGGTAAGAGTTTTTACAAAAATTTGCAT 230 Score = 127 bits (140), Expect = 4e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||| ||||| | |||| |||||| ||| || ||||| || || || | ||| || Sbjct 705 TACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCATCTTC 764 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 | ||| || || |||||||| || | || ||||| ||||| || || ||||| || || Sbjct 765 GAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCCTG 824 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | ||| | |||| ||| || || || | ||||||||| || || || ||||| Sbjct 825 GATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATGGTTTT 884 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||||||||| |||||||| Sbjct 885 GCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 >seq434 Length=1254451 Score = 89.7 bits (98), Expect = 9e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||| | || | ||| || ||| ||||||||||| | || | ||| || Sbjct 844104 ACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCTTCG 844163 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || || ||||| || | || ||||| ||||| || || ||||| ||||| Sbjct 844164 AGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCTTGG 844223 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | ||| | |||| ||| || || |||| || || |||| || || || || Sbjct 844224 ATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACCTCTAAGGTGATCGTCTTT 844283 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||| || ||||| || Sbjct 844284 CCAGTGAGGGTCTTGACAAAGATCTGCATGTT 844315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899593167272400