Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4393 158 2e-33 seq434 154 2e-32 seq26 123 4e-23 seq30 107 3e-18 seq350 86.0 9e-12 >seq4393 Length=1805 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | || || ||||||||||| ||||||||||| | |||| Sbjct 230 ATGCAAATTTTTGTAAAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTCT 171 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || |||||| || ||||||||||| || |||||||| ||| Sbjct 170 GACACAATTGAAAACGTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCAA 111 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| || |||||| ||| || ||||||||||||||| | | || | || || ||||| Sbjct 110 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTATAAC 51 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || |||||||| || || Sbjct 50 ATTCAGAAGGAGTCCACCCTTCATTTGGTCTT 19 Score = 140 bits (154), Expect = 5e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| | ||||| ||||| || || |||||||||| | || Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| || |||||| ||||| |||||||||||||||||||| || Sbjct 398 GATACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCAG 339 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| || ||||| ||||||||| | || || || || || || Sbjct 338 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 279 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || || |||||||| || Sbjct 278 ATTCAGAAAGAGTCAACTCTCCATTTAGTTTT 247 Score = 134 bits (148), Expect = 2e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | ||||| ||||| || ||| | ||||| || | ||| Sbjct 1370 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 1311 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| || ||||| |||||||||||||| || ||||| || ||| Sbjct 1310 GATACAATTGAAAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 1251 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| |||||| |||||||| ||||| | || |||| || || || Sbjct 1250 CAGAGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACTACAAC 1191 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| ||| | || |||||||| || || Sbjct 1190 AT-TCAAAAGGAGTCCACCCTTCATTTGGTCTT 1159 Score = 127 bits (140), Expect = 3e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | || |||||||| ||||| |||||||||||| || Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| ||||| ||||| ||||| || || |||||||| || Sbjct 1538 GACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 1479 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| || ||||| |||||||||||| | || | ||||| |||||| Sbjct 1478 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAT 1419 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || ||||| | || || ||| | ||| Sbjct 1418 ATTCAAAAAGAATCTACACTCCATCTTGTG 1389 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||| ||||| || || |||||||||| | || Sbjct 1142 ATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTCC 1083 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| |||||| || ||||||||||| || ||||| || || Sbjct 1082 GACACGATTGAGAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCTCCCGATCAG 1023 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| || ||||| |||||||||||| | || | ||||| ||||| Sbjct 1022 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAC 963 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || || ||| Sbjct 962 ATTCAAAAAGAGTCTACACTCCAT 939 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||||||||| || ||| | || || |||| ||| Sbjct 686 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAAACCATCACACTTGAGGTTGAAGCTTCC 627 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| ||||| ||||| |||||||| || || ||||| || Sbjct 626 GATACAATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 567 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| || |||||||||||||| ||| | ||| | || |||||||| Sbjct 566 CAGCGTTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACTCTGTCTGATTATAAC 507 Query 156003 AT 156004 || Sbjct 506 AT 505 >seq434 Length=1254451 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || || || ||||| || |||| ||| Sbjct 844084 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCC 844025 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| || |||||| ||||| |||||||| || |||||||| ||| Sbjct 844024 GATACAATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGACCAA 843965 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| || |||||| ||| || ||||||||||||||| | || | ||||| || ||| Sbjct 843964 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTACAAT 843905 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || ||||||||||| ||| || | |||| ||| Sbjct 843904 ATTCAAAAAGAGTCCACACTTCATTTAGTTTTACGACTTCGAGGTGGT 843857 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | || || | |||||||| || || || ||||| || |||| | Sbjct 844315 AACATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCT 844256 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | ||| ||| || ||| ||||| ||||| ||||| || || |||||||| Sbjct 844255 TCTGACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGAT 844196 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | ||||||| || || ||||||||||||||| | | || | || || ||| Sbjct 844195 CAGCAACGTTTGATTTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTAT 844136 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || || ||| | || |||||||| || || Sbjct 844135 AACATTCAGAAGGAGTCCACCCTTCATTTGGTCTT 844101 >seq26 Length=4002310 Score = 123 bits (136), Expect = 4e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||||||||||||||| ||||| ||||| || || ||||||| ||| Sbjct 1458180 AATGCAAATTTTTGTTAAAACATTGACTGGTAAAACCATTACCTTGGAGGTCGAAGCTTC 1458121 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || || || |||||| |||||||| ||||| || || || || || Sbjct 1458120 AGATACCATCGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGTATTCCCCCTGACCA 1458061 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | | || | ||| || || || ||||||||| ||||| || ||||| || || Sbjct 1458060 GCAGCGTCTCATCTTTGCTGGAAAACAACTCGAAGATGGTAGAACCTTGTCAGACTACAA 1458001 Query 156002 TAT 156004 ||| Sbjct 1458000 TAT 1457998 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||||||||| ||||| || |||| ||||| | || Sbjct 1458408 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTAGAGGTCGAGGCATC 1458349 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| ||||| ||| |||||| || |||||||| || || ||||| || || Sbjct 1458348 CGACACTATTGAGAACGTCAAAGCTAAAATCCAGGATAAAGAGGGTATCCCTCCGGACCA 1458289 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||||| || ||||| |||||||| || ||||||| | || || || || Sbjct 1458288 GCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAGGACGGCAGAACTCTTTCTGACTACAA 1458229 Query 156002 TAT 156004 || Sbjct 1458228 CAT 1458226 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 ||||| || ||||| ||||| || |||| || |||| ||| |||||| ||| ||| Sbjct 1471499 GGAAAGACAATTACCTTAGAGGTTGAAGCATCAGATACAATTGAAAACGTAAAAGCAAAA 1471440 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || ||||| ||||| ||||| |||||||| || ||| | | |||| || || ||||| Sbjct 1471439 ATTCAAGACAAAGAGGGCATTCCTCCAGACCAGCAACGTCTCATTTTCGCAGGAAAGCAA 1471380 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 || ||||| ||||| | |||||||||||||| Sbjct 1471379 CTGGAAGACGGAAGAACCCTTTCAGATTATAATAT 1471345 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| || ||||| || || ||||| ||||| ||||| | ||| Sbjct 1472365 ATGCAGATCTTCGTTAAAACTTTAACTGGCAAGACCATTACTTTAGAGGTCGAGGCATCT 1472306 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || ||||| ||||||||||| || ||||| || Sbjct 1472305 GATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAAGGCATCCCCCCAGACCAG 1472246 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || | | || | ||| || |||||| | ||||| Sbjct 1472245 CAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAAGA 1472211 >seq30 Length=3281913 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||| || || ||||| || || || ||||||| || Sbjct 593909 ATGCAAATTTTCGTGAAAACCCTGACGGGTAAGACTATCACCTTGGAGGTCGAAGCCTCG 593850 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || ||||| || || || ||||||||||| || || Sbjct 593849 GACACAATTGAGAACGTGAAGGCCAAGATACAGGACAAGGAGGGCATACCTCCGGACCAG 593790 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||||| ||||| || |||||||||||| | | ||| | || || || || Sbjct 593789 CAAAGGTTGATTTTCGCCGGCAAACAGCTCGAAGATGGCCGCACTCTTTCCGACTACAAC 593730 Query 156003 AT 156004 || Sbjct 593729 AT 593728 Score = 86.0 bits (94), Expect = 9e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18404 TCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAA 18463 ||| |||||| | |||| || | | |||||||| || | | ||| ||||| || ||| Sbjct 991368 TCACCTTTTT-TCTGGA-TCACTGACGTAAGTGTCAATGAGAATAGAGTACATCTCTGAA 991311 Query 18464 TGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATC 18523 || ||| |||| || || || || |||| ||| || | | |||||| | | ||| | Sbjct 991310 TGGATGTTTTCTATGGCAATTTGGAAACCATAGAAGCAACGAGCCTCTGTAACTTGTACT 991251 Query 18524 TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAAT 18583 || | || ||||| || ||||||||||| || || || || | | ||||||||| Sbjct 991250 TCTTGACTGAACCTTTCCACTAAATTCTCATTGACAATGCCATCTGAGGCAGCGAAAAAT 991191 Query 18584 GCCAAAACATATTTAATGAAATGTTTTTCAT 18614 ||||| || | ||||| ||||| |||| Sbjct 991190 GCCAATACGTGCGAGATGAAGTGTTTCTCAT 991160 >seq350 Length=778331 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| | || || ||||| || || | || || || | | Sbjct 635058 AAGATGCAGATTTTCGTAAAAACCCTCACGGGTAAAACGATCACCCTTGAGGTTGAGGCT 635117 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| || ||| || ||| || || || || ||||||||||| || || || Sbjct 635118 TCTGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCCGAC 635177 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || ||||| | || || || |||||||| ||| | | ||| | || ||||| Sbjct 635178 CAGCAGAGGTTGATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTAC 635237 Query 156000 AATATATCCAAAGAGG 156015 | ||||||||| ||| Sbjct 635238 A--ATATCCAAAAAGG 635251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731822186962000