Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq26 141 2e-28 seq4393 136 8e-27 >seq26 Length=4002310 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || | ||||| || | ||||| |||||| || || || Sbjct 1457953 CCTCCACGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGAC 1458012 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || |||| |||| || | |||||| ||||||||||| | | ||| || ||||| || Sbjct 1458013 AAGGTTCTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGA 1458072 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| |||||||| |||||| || ||||| || | |||||| | ||| || Sbjct 1458073 ATACCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGACC 1458132 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | ||||||||||||||||| |||||||||| ||| || |||||| Sbjct 1458133 TCCAAGGTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTGCATT 1458180 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| | ||| | | | || || || || || ||||||||||| | | | Sbjct 1472184 ATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAACTGCTTGCCAGCAAAGATGAGACGC 1472243 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || || |||||||| ||||| || || || ||||| || | | Sbjct 1472244 TGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTA 1472303 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || || |||| ||||||||| || |||||||| ||||||| || |||||| Sbjct 1472304 TCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCAGTTAAAGTTTTAACGAAGATCTGC 1472363 Query 192535 AT 192536 || Sbjct 1472364 AT 1472365 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | ||||| || || || || || ||| Sbjct 1458178 ATTCCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCA 1458237 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || || | ||||||||||| || || || | ||| || || || Sbjct 1458238 GAAAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGA 1458297 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || |||||||| || |||||| ||| || || |||| || || | || Sbjct 1458298 GGGATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCG 1458357 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| || || || || ||||| || || || | ||| ||||||||| Sbjct 1458358 ACCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 1458408 >seq4393 Length=1805 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || | ||| | ||| | |||| |||||| || ||||| || Sbjct 913 ATACCACCACGAAGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCT 972 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | ||||||||||| || || || | ||| ||||| || Sbjct 973 GAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGA 1032 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || |||||| ||| ||||| || | || || | || Sbjct 1033 GGGATACCTTCTTTATCCTGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCG 1092 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| || ||||||||||| | ||||||| ||| || ||||| Sbjct 1093 ACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || | ||| | ||| | ||||| ||| || || ||||||||| Sbjct 457 ATACCACCACGAAGTCGGAGTACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCA 516 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || |||||||| || || || | ||| ||||| ||| Sbjct 517 GACAGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGT 576 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| ||||| || ||||| || | ||| || | ||| Sbjct 577 GGGATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCA 636 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| ||||| | || || | ||| |||||||| Sbjct 637 ACCTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 686 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||||||||| | ||||| |||| |||||| || || || || Sbjct 685 ATGCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCC 744 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| || | ||| || |||||||| || || | || ||||| || Sbjct 745 GACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGA 804 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || ||||| ||| ||||| || | || || | || Sbjct 805 GGGATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCA 864 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||||||| ||||| | ||||| | ||| || ||||| Sbjct 865 ACTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || |||| ||||| || || ||||| | || | ||| ||| || || || || || Sbjct 1141 ATGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTC 1199 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||| ||| || | || || | || || || ||||| || ||||||||||||||||| Sbjct 1200 CGATAGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGG 1259 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||||||||| ||||| || || || || | ||| || | || Sbjct 1260 AGGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTC 1319 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||||||| ||||| | || |||| ||| |||||||| Sbjct 1320 AACTTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || | || | ||| | |||| ||||| |||||||| || Sbjct 1369 ATGCCACCACGAAGTCGAAGCACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGTCT 1428 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | ||||||||||| || || || | ||| ||||| || Sbjct 1429 GAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGA 1488 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| ||||| ||| ||||| || | ||||| | ||| Sbjct 1489 GGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCTGAGGCTTCG 1548 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| ||||| ||||| || |||| ||||||| ||| || ||||| Sbjct 1549 ACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAACAAAAATTTGCAT 1598 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||||| || || ||||| | || | ||| || || ||||| || Sbjct 1 ATGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCG 60 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | || || |||||||| || | || ||||| || || Sbjct 61 GACAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGA 120 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||||||||| || |||||| || || || || | || || | || Sbjct 121 GGAATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCG 180 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| |||||||| || | ||||| | ||| || ||||| Sbjct 181 ACTTCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984411318675750