Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq362 109 2e-18 seq447 107 6e-18 seq145 84.2 6e-11 >seq362 Length=962489 Score = 109 bits (120), Expect = 2e-18 Identities = 149/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || |||||||| ||||||||| ||||||||||| ||||||||||| |||| || || Sbjct 597857 ATCGTCATACGCGAGGGAATAGCGTGGGGATTGATAATGATGTCGGGGGTCAGACCCTC- 597915 Query 251905 GCA-GTGAAGGGCATATCCTTTTCCTCAATAAT-GTTTCCAATAGTTCCCTTTTGTCCGT 251962 ||| | ||| ||||| | ||| | | || | | | ||| ||| || ||||| |||| Sbjct 597916 GCACGAGAAAGGCATCT-CTTCTTGACGGTACTGGATACCACAAGTACCTTTTTGACCGT 597974 Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022 |||| || |||||| ||||| || ||| ||| |||||||| | || | ||| | Sbjct 597975 GACGCGACGCGAACTTGTCACCGATCTGAGGTATGCGCACACTACGCACTCGGATCTTGC 598034 Query 252023 AGAAGTTGTAACCATCACCGTTG 252045 |||| ||||| || |||| |||| Sbjct 598035 AGAATTTGTAGCCCTCACTGTTG 598057 >seq447 Length=263065 Score = 107 bits (118), Expect = 6e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 289023 TTTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||| |||| ||||||||||||||||| || || | | |||||| | ||||| || || Sbjct 109218 TTTTCTACCCACAGCATCAATTTCGTCGATAAACAAAATACACGGGGCATTTTTTCGAGC 109159 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || | ||| | |||||||| || || | ||||| ||| ||| ||||||||| ||| || Sbjct 109158 CATAGAAAACATGTCTCTTACTCGAGACGGTCCAACACCGACAAACATTTCTAAAAACTC 109099 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 |||| | |||||| | || | ||| ||||| || || || | || || | Sbjct 109098 AGAACCAGATACTGTTAAAAAAGGTACTGCGGCTTCTCCAGCAGTAGCTTTGGCAAGTAA 109039 Query 289203 TGTCTTACCTGTTCCAGGTGGTCC 289226 ||||| || |||||||| || || Sbjct 109038 AGTCTTGCCCGTTCCAGGCGGACC 109015 >seq145 Length=1681859 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 301814 GAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 || || ||||||| | ||| ||||| |||||||||| ||| |||| |||||||||| Sbjct 1266747 GATTTCCTTCAAT-CTGGGCACACCCAGGGTTACGTT---CTTCGACGACACACCAGCAA 1266692 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 | |||||||||||||| || | ||| || | || ||||||| | || || || | Sbjct 1266691 AATGGAAAGTATTCAGGGTCATTTGGGTGGCAGGTTCACCAAGAGACTGAGCAGCCAAGG 1266632 Query 301934 TACCAACCATTTCTCCTGG 301952 ||||||||| || || || Sbjct 1266631 CACCAACCATCTCACCAGG 1266613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471714920024965