Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq64 105 8e-17 seq350 100 3e-15 seq109 93.3 5e-13 seq78 91.5 2e-12 seq30 87.8 2e-11 >seq64 Length=1863977 Score = 105 bits (116), Expect = 8e-17 Identities = 238/348 (68%), Gaps = 11/348 (3%) Strand=Plus/Minus Query 732963 AAGCGCGACAAGTCGACCATCCTGCGCACGAACGAGCCCGCCACGGTGCACCGCGTGGTG 733022 ||||| ||| ||||| ||||||| | | |||| ||| || ||| ||| || || Sbjct 1819320 AAGCGAGACGCCTCGACGTTCCTGCGTAGCAGCGAGTCCGGCATCGTGGACCAGGTCATG 1819261 Query 733023 GTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGAT-CGTGACGCGCGCCATGCGCC- 733080 |||| | ||| |||| ||| ||| |||||| || || |||| || || Sbjct 1819260 CTGACCCTGAACAGCGAGGGCTACAAATTTTGCAAGATACG---CGTGCGCAGTGTGCGT 1819204 Query 733081 AGCCCG-AGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGC 733139 | ||| || | || ||||| | ||||||| ||||| |||||||||||| |||| Sbjct 1819203 ATACCGCAGATCGGTGACAAGTTTGCGTCGCGTCACGGTCAAAAGGGCACCTGTGGCATG 1819144 Query 733140 GTGCGCTCCAC-CGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGT 733198 || | | || ||||||||||| | || || ||| || ||| || |||||| | Sbjct 1819143 CTGTAC-CGACAGGAGGACATGCC--GTTCACC-TGCGAGGGTATCACCCCGGACATCAT 1819088 Query 733199 GATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCT 733258 ||||| || |||||||| ||||| |||||||| || ||| | || ||||| | ||| Sbjct 1819087 CATCAATCCCCACGCCATTCCGTCCCGCATGACGATTGGCCACTTGATCGAGTGCATCCA 1819028 Query 733259 GGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306 |||||| ||| | | | |||| | ||||| |||| |||||| || Sbjct 1819027 GGGCAAAGTGTCGTCAAACAAGGGAGAAATCGGTGACGCCACGCCGTT 1818980 >seq350 Length=778331 Score = 100 bits (110), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||| ||||| ||| | | | || | ||| || ||||||||||| || | ||| | Sbjct 405037 TGGCAAGTTCACCGGGAAGCAGAAGCCTCACTGCCGTCTGGATCTCCCGGGATGTGATGG 404978 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | | |||||| |||| |||| || ||| || ||| ||||||| || | |||| Sbjct 404977 TCGACCTCTTGTTGTAGTGTGCCAAGCGAGAGGCTTCCGTGGCGATGCGCTCAAAGATGT 404918 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||| ||||| | |||| ||| | || ||| ||||||| Sbjct 404917 CGTTGACGAAGCTGTTCATGATGGACATGGCCTTGGAGGATACCCCGGTGTCCGGGTGCA 404858 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| | |||||||||||| Sbjct 404857 CCTGCTTCAAGACCTTGTAGATG 404835 Score = 100 bits (110), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||| ||||| ||| | | | || | ||| || ||||||||||| || | ||| | Sbjct 428564 TGGCAAGTTCACCGGGAAGCAGAAGCCTCACTGCCGTCTGGATCTCCCGGGATGTGATGG 428505 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | | |||||| |||| |||| || ||| || ||| ||||||| || | |||| Sbjct 428504 TCGACCTCTTGTTGTAGTGTGCCAAGCGAGAGGCTTCAGTGGCGATGCGCTCAAAGATGT 428445 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||| ||||| | |||| ||| | || ||| ||||||| Sbjct 428444 CGTTGACGAAGCTGTTCATGATGGACATGGCCTTGGAGGATACCCCGGTGTCCGGGTGCA 428385 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| | |||||||||||| Sbjct 428384 CCTGCTTCAAGACCTTGTAGATG 428362 Score = 100 bits (110), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||| ||||| ||| | | | || | ||| || ||||||||||| || | ||| | Sbjct 506251 TGGCAAGTTCACCGGGAAGCAGAAGCCTCACTGCCGTCTGGATCTCCCGGGATGTGATGG 506192 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | | |||||| |||| |||| || ||| || ||| ||||||| || | |||| Sbjct 506191 TCGACCTCTTGTTGTAGTGTGCCAAGCGAGAGGCTTCCGTGGCGATGCGCTCAAAGATGT 506132 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||| ||||| | |||| ||| | || ||| ||||||| Sbjct 506131 CGTTGACGAAGCTGTTCATGATGGACATGGCCTTGGAGGATACCCCGGTGTCCGGGTGCA 506072 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| | |||||||||||| Sbjct 506071 CCTGCTTCAAGACCTTGTAGATG 506049 >seq109 Length=1464684 Score = 93.3 bits (102), Expect = 5e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| || ||| | || | |||||| ||||| || || || | | ||| ||| Sbjct 414355 GCCAATTCACCAGGCAGTAAGAGCCTCACGGCTGTCTGAATTTCCCGGGAGGTGATGGTG 414296 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 | |||||| | || ||||| || ||||||| | |||| || |||| ||||| Sbjct 414295 GACCTCTTGTTGTAATGGGCCAGGCGAGAAGCCTCGGAGGCGATACGCTCGAAGATGTCA 414236 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||| ||||| |||| |||| || ||||||||| || Sbjct 414235 TTGACGAAGCTGTTCATGATGCTCATCGCCTTGGAAGAGACACCAGTGTCGGGGTGGACT 414176 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||||||||||||| Sbjct 414175 TGCTTCAACACCTTGTAGATG 414155 >seq78 Length=1593723 Score = 91.5 bits (100), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1254374 CACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACG 1254433 |||||| ||||| || || || | | ||| ||| | |||||| | || ||||| || Sbjct 875318 CACGGCAGTCTGAATTTCCCGGGAGGTGATGGTGGACCTCTTGTTGTAATGGGCCAGGCG 875259 Query 1254434 GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACAT 1254493 ||||||| | |||| || |||| ||||| ||||| || |||||||| ||| Sbjct 875258 AGAAGCCTCGGAGGCGATACGCTCGAAGATGTCATTGACGAAGCTGTTCATGATGCTCAT 875199 Query 1254494 CGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 || |||| |||| || ||||||||| || ||||| | ||||||||||||| Sbjct 875198 CGCCTTGGAAGAGACACCAGTGTCGGGGTGGACTTGCTTCAACACCTTGTAGATG 875144 Score = 87.8 bits (96), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| || ||| | || | |||||| ||||| || || || | | ||| ||| Sbjct 1476958 GCCAATTCACCAGGCAATAAGAGCCTCACGGCAGTCTGAATTTCCCGGGAGGTGATGGTG 1476899 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 | |||||| | || |||||||| ||||| | | |||| || |||| |||||| Sbjct 1476898 GACCTCTTGTTGTAATGGGCCAGACGAGAAGCCTCTGAGGCGATACGCTCGAAAATGTCG 1476839 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||| ||||| |||| |||| || ||||||||| || Sbjct 1476838 TTGACGAAGCTGTTCATGATGCTCATCGCCTTGGAAGAGACACCAGTGTCGGGGTGGACT 1476779 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | |||||||| ||| Sbjct 1476778 TGCTTTAATACCTTGTAAATG 1476758 >seq30 Length=3281913 Score = 87.8 bits (96), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470 |||||||| | || |||| |||| || |||| | | ||||| |||| ||||||||| Sbjct 209867 CGCTTGTTGTAATGAGCCAAACGGGAAGCTTCGGAGGCAATGCGTTCGAAGATGTCGTTG 209808 Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 || || |||||||| ||||| |||| |||| ||| |||||| || || ||| Sbjct 209807 ACGAAGCTGTTCATGATGCTCATCGCCTTGGAAGAGACGCCAGTGTCGGGATGGACTTGC 209748 Query 1254531 TTGAGCACCTTGTAGATG 1254548 || || |||||||||||| Sbjct 209747 TTCAGAACCTTGTAGATG 209730 Score = 87.8 bits (96), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470 |||||||| | || |||| |||| || |||| | | ||||| |||| ||||||||| Sbjct 222709 CGCTTGTTGTAATGAGCCAAACGGGAAGCTTCGGAGGCAATGCGTTCGAAGATGTCGTTG 222650 Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 || || |||||||| ||||| |||| |||| ||| |||||| || || ||| Sbjct 222649 ACGAAGCTGTTCATGATGCTCATCGCCTTGGAAGAGACGCCAGTGTCGGGATGGACTTGC 222590 Query 1254531 TTGAGCACCTTGTAGATG 1254548 || || |||||||||||| Sbjct 222589 TTCAGAACCTTGTAGATG 222572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106692357801065