Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq30 242 3e-59 seq17 82.4 6e-11 >seq30 Length=3281913 Score = 242 bits (268), Expect = 3e-59 Identities = 324/445 (73%), Gaps = 8/445 (2%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 |||||| || ||||| ||| |||| |||||||| || | | ||| |||||||| Sbjct 1849907 CGGCGGATTCTTCAGGATGTAGGTATTGAGCTTGTGGTTGGTCTCAAGCACGCCGTGATG 1849848 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTT--CTTT-TTAGCGGACACGATGAGCTC 34319 || || ||||||||| || | |||| | |||| || ||| || | || || Sbjct 1849847 GCCACAGGCTTTGCAGGATTGCGA---AATGGTACCTTTCTTCGCGTTAACCAAAAGATC 1849791 Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379 ||||| || || || || | ||| || | ||| ||||||||||||| || || ||||| Sbjct 1849790 GGTCTCTGGATTATCGCAATTCGGGCAGAGCACGTACTTGCGGATGAAGCCGTCGAGCAG 1849731 Query 34380 GTCCTGTAACTTA-ACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 ||||| | ||| ||| | |||||| ||||||||||| || || ||||| || | | Sbjct 1849730 ATCCTGAAGCTTGGACGCA-TCGTGGCTACCGTTGACGATAAAGCGCTCGTTCTTAAAGT 1849672 Query 34439 CGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGAC 34498 | | |||||| || || || ||||| || || ||| |||| |||||||| | ||||| | Sbjct 1849671 CAAACTGCGTCTGAGCACCGAGCTCACAGCCAAAGAACTTGGTCGGGTAGGTAGCCGGGC 1849612 Query 34499 GTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCT 34558 | | | |||||||| | ||| |||||| ||||||||||| |||||||| ||||| | Sbjct 1849611 GACTTATGGCCTTGGCTACCTCGACCATGTTCACGATGACAGTTTTGATGCCATTGCCTT 1849552 Query 34559 TTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACAT 34618 | |||||||| ||||| |||||||||||| |||||||| || || || || || Sbjct 1849551 TGCCTTCGACTTTGGCTTGGATGCGCGGCATCTTGTAGCGATAAAAGGCATCGCTGACGC 1849492 Query 34619 TGCGGTTAACGTTCACAGTCCCCAT 34643 |||| ||||||||||| | ||||| Sbjct 1849491 TGCGATTAACGTTCACGCTACCCAT 1849467 >seq17 Length=3953650 Score = 82.4 bits (90), Expect = 6e-11 Identities = 164/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 27694 CGTTGTGTGCTTCGTATGGATAATCATTTTCGGCTTGTATGCCGCCCATATTCAT-GACG 27752 |||| | || ||||| ||||| || |||| | || | ||| |||| |||| | || Sbjct 1852435 CGTTCTCCGCCTCGTAGGGATAGTCCGTTTCTGTTTCCAGGCCTCCCA-ATTCCTCGATA 1852493 Query 27753 GCTTCGAACGCCGTGTGCAGCAAACCTCCGTTGCAGCCCGCGTTTACAAAATCGCAGTCG 27812 ||| | |||| || | | ||| |||||||||||||| || | |||||||| Sbjct 1852494 GCTCTGTACGCTGTATCCGGCAGGCCTCCGTTGCAGCCACTGTCCAACTTGTCGCAGTCA 1852553 Query 27813 ATGAGCTGTTGCTCTGACAGATTTATCAATTGATTGTGTTTGATTGCAAACTGGCTTTCT 27872 ||||||| ||||| || | |||| || |||||| || || |||||| ||| Sbjct 1852554 ATGAGCTCCTGCTCCGAGAACGACATCAGCTGGCCGTGTTTTATGGCGTACTGGCCTTCC 1852613 Query 27873 AAACTGCCAAGGGTGGC---GAAGGCCCAACACGCGCCGCACATGCCTTGATTTTTCAC 27928 | |||| ||| | ||| |||||||| | ||||||| ||||||||||||||| Sbjct 1852614 ACGTTGCC---GGTCACTGAGAATGCCCAACAGGAGCCGCACTGGCCTTGATTTTTCAC 1852669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412814203444385