Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq434 152 3e-32 seq4393 125 5e-24 seq26 98.7 6e-16 seq30 91.5 1e-13 seq350 82.4 5e-11 >seq434 Length=1254451 Score = 152 bits (168), Expect = 3e-32 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| |||| |||| ||||||||||||||||||||| || || | || |||| Sbjct 844100 CAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATC 844159 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| |||| |||||||| ||| | || | ||||| ||||| Sbjct 844160 TTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTC 844219 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | |||||| |||||| | | |||| ||| || || || || | ||| || || Sbjct 844220 TTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACCTCTAAGGTGATCGT 844279 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||| ||||||||||| ||||||||||||||| Sbjct 844280 CTTTCCAGTGAGGGTCTTGACAAAGATCTGCATG 844313 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34775 TGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGC 34834 |||| ||| ||| || ||||| || ||||| || || |||| |||| || || ||| Sbjct 843882 TGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTGCGACCATCTTCGAGCTGC 843941 Query 34835 TTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTT 34894 || || || || ||||||||||| |||||| | || | || || ||||| | ||||| Sbjct 843942 TTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTGAATTTTA 844001 Query 34895 TGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTG 34954 |||||| | | || | || || || || || | ||| || |||||||| ||| Sbjct 844002 GCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCGTCTTTCCAGTG 844061 Query 34955 AGGGTCTTTACAAAGATCTGCATG 34978 || ||||| ||||||||||||||| Sbjct 844062 AGAGTCTTGACAAAGATCTGCATG 844085 >seq4393 Length=1805 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| |||| |||| |||||| |||||||| ||||||||||| ||||| | || Sbjct 1158 CAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTGCGCCCGTC 1217 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||| || |||| || || || || | || | || || || || Sbjct 1218 TTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATC 1277 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| |||||| | | || | ||| |||||| || || | || ||||| Sbjct 1278 TTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATGGT 1337 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| ||||| ||||||||||||||| Sbjct 1338 TTTGCCAGTGAGAGTCTTAACAAAGATCTGCATG 1371 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| |||| |||| ||||||||||||||||||||| || || | || |||| Sbjct 18 CAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATC 77 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || || ||||||||||| |||||| | || | || || || || Sbjct 78 TTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTATC 137 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| |||||| | | || | ||| |||||||| || | ||| || || Sbjct 138 CTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATAGT 197 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || || |||||||| || |||||| Sbjct 198 TTTACCGGTAAGAGTTTTTACAAAAATTTGCATG 231 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| |||||||| | | || |||| || |||||||| || || || Sbjct 267 CTCTTTCTGAATGTTGTAGTCCGACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAA 326 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| |||||||| ||| | || | || || ||||| | ||||| |||||| Sbjct 327 AATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTTGTCTTGAATTTTAGCCTTGACGTT 386 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | |||| || ||||||||| || | |||||| || || || || || || || || Sbjct 387 TTCAATCGTATCTGAGGCCTCGACTTCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAAC 446 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 447 GAAGATCTGCAT 458 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || |||||||| |||||||| | | || |||| || |||||||| || || || Sbjct 723 CTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAA 782 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| |||||||| ||| | || | ||||| ||||| | |||||| |||||| Sbjct 783 AATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCCTGGATTTTTGCTTTGACATT 842 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| |||||| || || | || ||||| || || || || || ||||| Sbjct 843 TTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTAC 902 Query 34966 AAAGATCTGCAT 34977 |||||| ||||| Sbjct 903 AAAGATTTGCAT 914 Score = 105 bits (116), Expect = 4e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||||||||||||||| || || || | ||| |||| || || ||||| || ||||| Sbjct 495 CTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAA 554 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||||| ||| | || | || || ||||| | ||||| || || Sbjct 555 AATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTGGCCTTCACATT 614 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || || || || |||| || ||||| ||||| ||||| ||||| || Sbjct 615 TTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGAC 674 Query 34966 AAAGATCTGCATG 34978 ||||||||||||| Sbjct 675 AAAGATCTGCATG 687 >seq26 Length=4002310 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | || | ||| ||||| |||| || |||||||||||||| ||||| | Sbjct 1458179 TTCCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAG 1458238 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || || || || || || ||||| |||| || |||||||| | | Sbjct 1458239 AAAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAG 1458298 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| || || | ||||| ||||||| | || | || ||||||| Sbjct 1458299 GGATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGA 1458358 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| || |||||||| || | |||||| ||||| |||||||| Sbjct 1458359 CCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Score = 95.1 bits (104), Expect = 8e-15 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || |||||||| | || || | || |||||||| ||||| || || ||| | | | || Sbjct 1471315 AGAACCAGGTGGAGTGTTGAT-TCTTTCTGAATATTATAATCTGAAAGGGTTCTTCCGTC 1471373 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||||||||||| ||||| || || |||||||||||| | || | ||||| ||||| Sbjct 1471374 TTCCAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCTGGAGGAATGCCCTCTTTGTC 1471433 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | |||||| ||| ||| | | || | || || || || || | ||| || || Sbjct 1471434 TTGAATTTTTGCTTTTACGTTTTCAATTGTATCTGATGCTTCAACCTCTAAGGTAATTGT 1471493 Query 34945 CTTTCC 34950 |||||| Sbjct 1471494 CTTTCC 1471499 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 34774 GTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTG 34833 ||||| |||| |||||||||||||| ||||| || || | | | || || | || Sbjct 1472162 GTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAACTG 1472221 Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| || || ||||| || || ||||||||| | || | || || ||||| | || || Sbjct 1472222 CTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATCTT 1472281 Query 34894 TTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 ||||| || || || | ||| |||||||| || | || |||||||| || Sbjct 1472282 GGCCTTGAC--ATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCA 1472339 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || | || || || |||||||||||||| Sbjct 1472340 GTTAAAGTTTTAACGAAGATCTGCATGAT 1472368 >seq30 Length=3281913 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| ||||| ||||| || || |||| |||| || || || || |||||||| ||| Sbjct 593722 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAATC 593781 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | | ||||||||| | || | ||||||||||| | ||| || || ||| | Sbjct 593782 AACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTCTCA 593841 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || ||| ||||| || | ||| || ||||| ||||| ||||| || || || Sbjct 593842 ATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACGAAA 593901 Query 34970 ATCTGCAT 34977 || ||||| Sbjct 593902 ATTTGCAT 593909 >seq350 Length=778331 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || || || || || || || || |||| |||| || || || || || ||||||||| Sbjct 635248 TTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATC 635189 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | | |||||||| | || | || || ||||| | || || |||||| | | Sbjct 635188 AACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCG 635129 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | ||| ||||| || |||| ||| || || || ||||||||||| ||||| || Sbjct 635128 ATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGAAA 635069 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 635068 ATCTGCAT 635061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325671186720455