Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4393 95.1 1e-14 seq26 95.1 1e-14 >seq4393 Length=1805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||| | || ||||||||||| || | ||| ||||| Sbjct 1370 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 1311 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || || ||| ||||||||||| | || ||||| Sbjct 1310 GATACAATTGAAAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 1251 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| ||| || || ||||| || |||| ||| | ||||||||||| Sbjct 1250 CAGAGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACTACAAC 1191 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| || | || |||| ||| | | ||||| || Sbjct 1190 ATTCAAAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGG 1144 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| |||||| | || || ||||| |||||| | ||| |||||| Sbjct 230 ATGCAAATTTTTGTAAAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTCT 171 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || || ||||||||||| | || || || Sbjct 170 GACACAATTGAAAACGTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCAA 111 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || |||| |||| ||| || || ||||| || || | | ||| || | ||||| ||| Sbjct 110 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTATAAC 51 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| || | || |||| ||| | | ||||| || Sbjct 50 ATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGG 4 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| |||||| | || || ||||| || || | ||| ||||| | Sbjct 1142 ATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTCC 1083 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| || ||| ||||||||||| | || |||||| Sbjct 1082 GACACGATTGAGAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCTCCCGATCAG 1023 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | |||| || ||||||||||| || || | ||| | | ||||| ||| Sbjct 1022 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAC 963 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||| |||||||| Sbjct 962 ATTCAAAAAGAGTCTAC 946 >seq26 Length=4002310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||||||||| || || || || || || || ||| | || ||||| Sbjct 1458408 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTAGAGGTCGAGGCATC 1458349 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | || ||| || || |||||||| || | || ||| || Sbjct 1458348 CGACACTATTGAGAACGTCAAAGCTAAAATCCAGGATAAAGAGGGTATCCCTCCGGACCA 1458289 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | | |||| || ||||||||||| ||||||| || ||| | | |||||||| Sbjct 1458288 GCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAGGACGGCAGAACTCTTTCTGACTACAA 1458229 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||| ||||| ||||| | || |||| || | |||| || |||| Sbjct 1458228 CATTCAGAAGGAATCTACTCTTCATCTGGTTCTGCGTCTGCGTGGTGGAA 1458179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398850330161605