Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq26 109 9e-19 seq4393 104 4e-17 >seq26 Length=4002310 Score = 109 bits (120), Expect = 9e-19 Identities = 132/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 146058 GGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAAAAATAA 146116 ||||| |||||||| | || || ||| ||| | ||||| ||| |||| |||||| || Sbjct 1471499 GGAAAGACAATTACCTTAGAGGTTGAAGCATCA-GATACAATTGAAAACGTAAAAGCAAA 1471441 Query 146117 AATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACA 146176 ||| ||| ||||| |||||||| || || || ||| | |||||||| ||||| || || Sbjct 1471440 AATTCAAGACAAAGAGGGCATTCCTCCAGACCAGCAACGTCTCATTTTCGCAGGAAAGCA 1471381 Query 146177 ATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCA 146233 | | || || ||||| | ||||||||||||| || |||||||| || |||| Sbjct 1471380 ACTGGAAGACGGAAGAACCCTTTCAGATTATAATATTCAGAAAGAATCAACACTCCA 1471324 >seq4393 Length=1805 Score = 104 bits (114), Expect = 4e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || | ||||| ||||||||||||||||||| | || || ||| | | | Sbjct 1597 TGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA- 1539 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||| ||| ||||| ||| ||||| || || || || ||||| Sbjct 1538 GACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 1479 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | ||||| || |||||||| | || ||| | || | |||| |||||| Sbjct 1478 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAT 1419 Query 146211 ATACAAAAAGAATCGACTATCCAT 146234 || ||||||||||| || ||||| Sbjct 1418 ATTCAAAAAGAATCTACACTCCAT 1395 Score = 100 bits (110), Expect = 4e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| |||| || |||||||| || | || || || | | | Sbjct 457 TGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA- 399 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| |||| || || |||||| ||| ||||||||||| || || ||||| Sbjct 398 GATACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCAG 339 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | |||||||| || || ||| | || ||| | || || | || || || Sbjct 338 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 279 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || ||||| || ||| |||||||||| || || | ||||||| Sbjct 278 ATTCAGAAAGAGTCAACTCTCCATTTAGTTTTGCGTCTTCGAGGAGG 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786112891549400