Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq618 105 5e-17 seq165 104 2e-16 seq15 98.7 7e-15 seq452 86.0 5e-11 >seq618 Length=271502 Score = 105 bits (116), Expect = 5e-17 Identities = 147/200 (74%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 637108 ATTACAAAG---AAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCAT 637164 |||| |||| ||| ||||| | |||| ||| |||||| |||| |||||||||||| Sbjct 40938 ATTAGAAAGCGCAAAGTTATTATTGATTTCTCTAGCCCAAATGTTGCCAAAGAAATGCAT 40879 Query 637165 ATTGGACATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGA-AATGTG 637223 |||| || || || |||||||| ||||| || |||| ||| | || || || | Sbjct 40878 GTTGGCCACTTGAGGTCAACTATAATTGGCGATAGTATTGCCAGGTTGTTGGAGTATCT- 40820 Query 637224 TGGACACGATGT-TTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGT 637282 ||| |||||||| ||| || | ||||| || || || |||||||| ||||| || |||| Sbjct 40819 TGGTCACGATGTATTAAGGT-TGAATCACGTTGGAGACTGGGGAACGCAATTTGGAATGT 40761 Query 637283 TAATTGCTTATATTAAAAAT 637302 | ||| || || || || || Sbjct 40760 TGATTACTCATCTTGAAGAT 40741 >seq165 Length=1028735 Score = 104 bits (114), Expect = 2e-16 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 |||||||| |||| || | || || |||| ||||| ||||| ||||| || || | Sbjct 586563 TTTGTCTTCAGTTTTGTCCATGCCGTAGGCAAGTGCAGCCGCAGTAGGTTCGTTGATGAC 586622 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 || | || || ||||| | ||| ||| || ||||| || ||||||||||| ||||| Sbjct 586623 TCGAAGCACGTTCAGACCGGAGATTTGTCCAGCGTCTTTTGTAGCTTGTCTTTGGGAATC 586682 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 |||||| || || || ||||| |||||||||| | | ||| Sbjct 586683 GTTAAAGTAGGCGGGCACAGTGATAACGGCATTTTTCACT 586722 >seq15 Length=2982310 Score = 98.7 bits (108), Expect = 7e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 399295 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 399354 |||||||||||||| |||||| | |||||| || | | |||| |||||| | || || Sbjct 1252723 ATTTCTGTTTGGAACAATGGTAAAGGTATTCCAGTTGTAGTTCACAAAGAAGAAAAAATG 1252664 Query 399355 TGGGTACCATCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAG 399414 | || ||| | ||||| ||||| | | | |||||| ||||||| ||| | | ||| Sbjct 1252663 TTTGTTCCAACTATGATCTTTGGTCACTTACTGACGTCTTCTAATTATGATGATGAAGAG 1252604 Query 399415 GAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 399466 |||||| ||| || | ||| |||| ||| |||||||| |||||||| Sbjct 1252603 GAAAAAGTAACTGGAGGCAGAAACGGTTATGGTGCTAAGCTGTGTAATATTT 1252552 >seq452 Length=772944 Score = 86.0 bits (94), Expect = 5e-11 Identities = 300/466 (64%), Gaps = 2/466 (0%) Strand=Plus/Minus Query 281632 AGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACC 281691 |||||| || ||||| || | || | ||||| | ||| ||||| ||||| | ||| Sbjct 376712 AGGAATAGTGGTGTTCCTCTTGATGAGCGCAGTCATGACACCGCCAGCAGTTTCAATACC 376653 Query 281692 AAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACC 281751 ||||| || ||||||||||||| || | || || ||||| | |||| | | || Sbjct 376652 CAGAGAGAGGGGAGTGACATCAAGGAGCAGAAGATCTTGAACCTCTTCAGACTTGTCTCC 376593 Query 281752 AACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGT 281811 ||| || || || || | ||||| || |||||||| || || || || || | | Sbjct 376592 GTGAAGGATGGCAGCCTGTACGGCAGCTCCGTATGCAACGGCCTCGTCGGGGTTGATGGA 376533 Query 281812 TTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATAC 281870 | || || | ||| || ||||| || | || | || || | ||| || || |||| Sbjct 376532 CTTGTTAAGCTCTTTGCCGTTGAAGAAGTCCTGGAGGAGCTTCT-GTACTTTGGGGATAC 376474 Query 281871 GAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCA 281930 | | || |||||||| | || || || || | ||| | || |||| || | || Sbjct 376473 GGGTGGAGCCTCCAACGAGGACGATATCGTGAATCTGGGCCTTGTCCATCTTGGCGTCAC 376414 Query 281931 ATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGA 281990 || || || || ||||| ||| | | | || | || | ||| ||||| |||| Sbjct 376413 GTAGGGACTTCTCGACTGGTTCGAGAGTACCGCGGAAGAGATCAGCACAGAGTTCCTCGA 376354 Query 281991 ATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAA 282050 || |||| || | || || || ||||| ||||| ||| || || | || | Sbjct 376353 ATCGGGCTCGCGTGATGCTGGTATAGTAGTCAATGCCTTCATACAGCGAGTCGATCTCGA 376294 Query 282051 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 282096 | | | || ||||| || || || | ||| || || || || || Sbjct 376293 TGCTGGCCTGGGTCGAGGAGGAAAGAGTACGCTTGGCGCGCTCGCA 376248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740363073510570