Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq4393 156 4e-33 seq434 114 1e-20 seq26 100 3e-16 seq30 96.9 3e-15 >seq4393 Length=1805 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | ||||||||||||||| | || || ||||| || |||||||| || Sbjct 231 GCCTCCTCGAAGACGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGA 290 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || ||| | || | ||||||||||| || |||||| | |||| |||||||||||| |||| Sbjct 291 CAATGTACGTCCA-TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAG 349 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 |||||||||||||||| |||||| || | | ||| | ||| |||| || || | Sbjct 350 GTATGCCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGA 409 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| | || | || ||||| || | ||||| ||||| || |||||| Sbjct 410 CTTCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCATA 459 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | ||| || || | ||| | ||||| |||||||| |||||||| || Sbjct 687 GCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGA 746 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || ||| | || | ||||||||||| || |||||| | |||| |||||||||||| |||| Sbjct 747 CAATGTACGTCCA-TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAG 805 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || || |||||||| |||||| ||| | | ||| | ||||| | || || | Sbjct 806 GGATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAA 865 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| | || | || ||||| || | |||||||| || ||||||||| Sbjct 866 CTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCATA 915 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 137267 ||| | ||||||||||||||| || || || || | ||| | | |||||||| || Sbjct 1395 ATGGAGTGTAGATTCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTG 1454 Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 ||||||||| | |||| ||| |||||||| ||||| || || |||||||| ||||| Sbjct 1455 TTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTT 1514 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 | ||| | | ||| | |||||||| || ||| ||||| | || | || || || || Sbjct 1515 TGCTTTGACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGT 1574 Query 137388 CAATGTTTTTACGAATATTTGCAT 137411 | ||||| || || |||||||| Sbjct 1575 TAGGGTTTTAACAAAAATTTGCAT 1598 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 137267 ||| | |||||| |||||||| ||||| || || | ||| | | |||||||| || Sbjct 939 ATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTG 998 Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 ||||||||| | |||| ||| |||||||||||||| || |||||||| || |||||| Sbjct 999 TTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGAATTTT 1058 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 ||| | | || | |||||| | || || ||||| | ||| | || || || || Sbjct 1059 AGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGT 1118 Query 137388 CAATGTTTTTACGAATATTTGCAT 137411 | ||||| || || |||||||| Sbjct 1119 AAGAGTTTTAACAAAAATTTGCAT 1142 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | |||||| || ||||||| ||||| || ||||| |||||||| ||| Sbjct 1599 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGA 1658 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||| | ||||| || || || ||||| | |||| ||| |||||||| ||||| Sbjct 1659 CAGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGG 1718 Query 137304 TATGCCTTCTTTGTCGGTAATTTT 137327 || ||||||||||| |||||| Sbjct 1719 GATACCTTCTTTGTCTTGAATTTT 1742 >seq434 Length=1254451 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | |||||| || ||||||| || || || || || ||||| || ||| Sbjct 844085 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 844144 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||| | |||||||| || || ||||| | |||| |||||||||||| ||||| Sbjct 844145 CAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGG 844204 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| |||||| ||| | | ||| | |||||| | | ||| || Sbjct 844205 GATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCAC 844264 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||| || || | || || || || || ||||| Sbjct 844265 CTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 844312 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || ||||| | || ||||||||||||| ||| || |||||||| || ||||| || Sbjct 843855 TGACCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCT 843914 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | ||||| |||||||| || || |||||| | ||||| ||||| || || ||| Sbjct 843915 GAAAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGA 843974 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||||||||| |||||| || | | ||| | || || | | ||| Sbjct 843975 GGGATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCC 844034 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | || | |||||| || || | || || || || || ||||| Sbjct 844035 ACCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 >seq26 Length=4002310 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | ||| | ||| | ||| |||||||| || || ||||| || Sbjct 1457952 GCCTCCACGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGA 1458011 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || || |||||||||||||| |||||| |||| ||||| ||||| || || || Sbjct 1458012 CAAGGTTCTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGG 1458071 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || ||||| || | | || | || |||| | ||| || Sbjct 1458072 AATACCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGAC 1458131 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || ||||||||||| || || |||||||| Sbjct 1458132 CTCCAAGGTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTGCAT 1458179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||||| ||| | || | ||| ||||| || || ||||||||||| Sbjct 1458409 CCTCCACGAAGACGCAGAACCAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCAGAA 1458468 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | || || |||||| |||| ||||| ||||| || ||||| Sbjct 1458469 AGCGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 1458528 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTA 137335 ||||| |||||||| ||||||| ||||| Sbjct 1458529 ATGCCCTCTTTGTCTTGAATTTTTGCTTTTA 1458559 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||| ||| | ||||| |||||||| || || |||||||| || Sbjct 1458181 CCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 1458240 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||| ||||| ||||||||||| | |||| ||| ||||| || ||||| Sbjct 1458241 AGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGG 1458300 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || ||||| || ||||| ||| | | || | ||||| | | || || Sbjct 1458301 ATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGACC 1458360 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || ||||| || || || || || ||||| Sbjct 1458361 TCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| | || | ||| |||||||| || || || ||||| Sbjct 1471300 CCTCCACGAAGACGGAGAACCAGGTGGAGTGTTGATTCTTTCTGAATATTATAATCTGAA 1471359 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| ||||| || || || | || ||||||||||| || ||||| Sbjct 1471360 AGGGTTCTTCCGTCTTCCAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCTGGAGGA 1471419 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| |||||||| ||||||| ||||| | ||| | || |||| | ||| || Sbjct 1471420 ATGCCCTCTTTGTCTTGAATTTTTGCTTTTACGTTTTCAATTGTATCTGATGCTTCAACC 1471479 Query 137365 TCAACAGTCACCGTCTTGCC 137384 || | || | ||||| || Sbjct 1471480 TCTAAGGTAATTGTCTTTCC 1471499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 137206 AAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGT 137265 || |||| || ||||| || || |||||||| || | ||| || |||||| | Sbjct 1472160 AAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAAC 1472219 Query 137266 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 137325 || || |||||| |||| ||||| ||||| || || || |||||||||||||| ||| Sbjct 1472220 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATC 1472279 Query 137326 TTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 137385 || || | | || | || || | | || || || | ||| | |||||||| Sbjct 1472280 TTGGCCTTGACATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCA 1472339 Query 137386 GTCAATGTTTTTACGAATATTTGCAT 137411 || || ||||| ||||| || ||||| Sbjct 1472340 GTTAAAGTTTTAACGAAGATCTGCAT 1472365 >seq30 Length=3281913 Score = 96.9 bits (106), Expect = 3e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 50497 TCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGT 50556 ||||||| ||||| || || ||| |||| ||||| || || ||| | || |||| || Sbjct 991835 TCAAAGATGCCGTTGAAATTGAACAAGAATTTTTAACTGATGCTCTGCCAGTGGAGATGA 991894 Query 50557 TGGGCATGAAC-GCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTG 50615 | ||||||||| ||| | | |||||| |||||||||| ||||||||||||||| || || Sbjct 991895 TTGGCATGAACTGCAAGC-TCATGTGCCAGTACATTGAATTTGTTGCAGACAGACTGCTG 991953 Query 50616 TTGCAGCTGGGA 50627 | |||| ||| Sbjct 991954 CAGGAGCTTGGA 991965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488510748474000