Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq3748 96.9 5e-15 seq214 89.7 7e-13 seq4182 86.0 8e-12 seq2678 86.0 8e-12 seq64 86.0 8e-12 >seq3748 Length=1445 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 1322 TTCCTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1381 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 1382 CCCCGCCGGGGAG 1394 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1323 TCCTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1382 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 1383 CCCGCCGGGGAG 1394 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1394 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1335 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 1334 TACTACCGAGGA 1323 >seq214 Length=923020 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||| Sbjct 548686 AACTCCGCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 548627 Query 139411 TATACTAACGAGGATTT 139427 ||||||| || |||||| Sbjct 548626 TATACTACCGCGGATTT 548610 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||| || |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 548613 TCCGCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 548672 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 548673 CCCGCCGCGGAG 548684 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||| || |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 548613 TCCGCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 548672 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 548673 CCCGCCGCGGAG 548684 >seq4182 Length=1742 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| ||| ||||||| || |||||||||||||||| Sbjct 121 TCCTCGGTAGTATAGTGGTTAGTATCTCCGCCTGTCGCGTGGAGGACCGGGGTTCGATTC 62 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 61 CCCGCCGGGGAG 50 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| ||||||||||||| || |||||| ||| |||| ||||||| Sbjct 48 AACTCCCCGGCGGGGAATCGAACCCCGGTCCTCCACGCGACAGGCGGAGATACTAACCAC 107 Query 139411 TATACTAACGAGGAT 139425 ||||||| ||||||| Sbjct 108 TATACTACCGAGGAT 122 >seq2678 Length=18144 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| ||| ||||||| || |||||||||||||||| Sbjct 16610 TCCTCGGTAGTATAGTGGTTAGTATCTCCGCCTGTCGCGTGGAGGACCGGGGTTCGATTC 16551 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 16550 CCCGCCGGGGAG 16539 >seq64 Length=1863977 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| ||| ||||||| || |||||||||||||||| Sbjct 1060022 TCCTCGGTAGTATAGTGGTTAGTATCTCCGCCTGTCGCGTGGAGGACCGGGGTTCGATTC 1060081 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 1060082 CCCGCCGGGGAG 1060093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652800365750800