Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq4393 116 4e-21 seq350 113 4e-20 seq434 111 2e-19 seq26 98.7 1e-15 >seq2 Length=6207162 Score = 123 bits (136), Expect = 2e-23 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| ||||| || | ||||||| |||| || | ||| || || |||| |||||||| Sbjct 5348701 GCTCTATCAGATCTTTCATCAGATGAGGATTGACGATCTGGAATTCACCGGAGAGCACGC 5348760 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 ||| || | ||||||||| | || |||| || ||||| || || | ||| || | Sbjct 5348761 GCCTTGTGTAGATGTTGCTCGTGTATGGATCAACTGATTCGTTATTACCGAGAATTTGGG 5348820 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 ||| |||||| ||||| || || |||| ||||||||| | |||| | | || Sbjct 5348821 ACATCGATGCCGTTGGCATTAGAGCGACGAGCAACGAGTTGCGAACACCGTGTTGGGCTA 5348880 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 |||| |||||| | | ||||| |||||| | || ||||||||||||||||||| Sbjct 5348881 TTTTAAATTTCAGATCAGACCAGTTCCAGAGGTCTGTTGGCGTCACGTTCCACATGTCGT 5348940 Query 148471 ACTGCA 148476 ||||| Sbjct 5348941 GCTGCA 5348946 Score = 120 bits (132), Expect = 3e-22 Identities = 174/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| ||||| || | ||||||| |||| || | || || || |||| |||||||| Sbjct 5337402 GCTCTATCAGATCTTTCATCAGATGAGGATTGACGATTTGGAATTCACCGGAGAGCACGC 5337461 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 ||| || | ||||||||| | || |||| || ||||| || || | ||| || | Sbjct 5337462 GCCTTGTGTAGATGTTGCTCGTGTATGGATCAACTGATTCGTTATTACCGAGAATTTGGG 5337521 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 ||| |||||| ||||| || || |||| ||||||||| | |||| | | || Sbjct 5337522 ACATCGATGCCGTTGGCATTAGAGCGACGAGCAACGAGTTGCGAACACCGTGTTGGGCTA 5337581 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 |||| |||||| | | ||||| |||||| | || ||||||||||||||||||| Sbjct 5337582 TTTTAGCTTTCAGATCAGACCAGTTCCAGAGGTCTGTTGGCGTCACGTTCCACATGTCGT 5337641 Query 148471 ACTGCA 148476 ||||| Sbjct 5337642 GCTGCA 5337647 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 148815 TTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 || |||||||| || |||| ||||||||| ||| |||||||| | | ||| | |||| Sbjct 5338127 TTAACGGCGATGGATGCTAAATTGCACACTGCCACTTCATCCGGTGAGGAGTATTGTACG 5338186 Query 148875 ATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 ||||| | |||| ||||||| ||||| ||||| |||| ||||| ||| | Sbjct 5338187 ATCTCAGTACACAAGTTGCTGCTCTTGATGGTGCCCAGATTCTGCTGATTTGACTTTCGA 5338246 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 ||||| ||||||||| ||||||||||| |||||||||||||| Sbjct 5338247 TTGCAGTGGTCCTTGTAAAGCATGTACGGCATTCCAGTTTCCACCTG 5338293 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 148815 TTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 || |||||||| || |||| ||||||||| ||| |||||||| | | ||| | |||| Sbjct 5349426 TTAACGGCGATGGATGCTAAATTGCACACTGCCACTTCATCCGGTGAGGAGTATTGTACG 5349485 Query 148875 ATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 ||||| | |||| ||||||| ||||| ||||| |||| ||||| ||| | Sbjct 5349486 ATCTCAGTACACAAGTTGCTGCTCTTGATGGTGCCCAGATTCTGCTGATTCGACTTTCGA 5349545 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 ||||| ||||||||| ||||||||||| |||||||||||||| Sbjct 5349546 TTGCAGTGGTCCTTGTAAAGCATGTACGGCATTCCAGTTTCCACCTG 5349592 >seq4393 Length=1805 Score = 116 bits (128), Expect = 4e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||||||||| ||||| || || || ||| || ||| ||| || |||| Sbjct 25 AAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACA--GTGTACGGCCATCTTCGA 82 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| || |||| || || || ||||| ||||| || ||||| || || || Sbjct 83 GCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTATCCTGGA 142 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || ||||| | |||| ||||| | | ||| || || | ||| | ||||| | Sbjct 143 TTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATAGTTTTAC 202 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 |||| ||||||||||| ||||| |||||| || Sbjct 203 CGGTAAGAGTTTTTACAAAAATTTGCATGCCT 234 Score = 111 bits (122), Expect = 2e-19 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || |||||||| || || ||| |||| | |||||||| ||||||||||| ||||| || Sbjct 988 TCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTA 1047 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| || |||| | ||||| |||||||| || ||| || || | |||| Sbjct 1048 TC-CTGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGAT 1106 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||||| || || |||||||| || ||||| |||||| || Sbjct 1107 TGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCATGCCT 1146 Score = 109 bits (120), Expect = 5e-19 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAAT-CGCCCATCGTGGACGAGTCCTCGAG 133513 ||||| | || ||||||||||| || ||||| | || | || | | | || ||||| Sbjct 253 AAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGACAATGTACGTCCA-TCTTCGAG 311 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || |||| | || ||||| || ||||| |||||||| ||||| ||| Sbjct 312 TTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTTGTC-TTGAA 370 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||||| | |||| ||| || | || ||| || || | ||| | ||||||| Sbjct 371 TTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGACTTCTAGGGTTATTGTTTTGC 430 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || |||||||| ||||| |||||||| Sbjct 431 CAGTTAGAGTTTTAACGAAGATCTGCAT 458 Score = 109 bits (120), Expect = 5e-19 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| ||| |||||||| || || ||||| || || || | | | || ||||| | Sbjct 711 ATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCA-TCTTCGAGTT 769 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || |||| | || ||||| || |||||||| || || ||||| ||| | Sbjct 770 GCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCCTGGAT-T 828 Query 133576 TTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||||||| || | |||| ||||| | || ||| || || | |||| ||||||||| Sbjct 829 TTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATGGTTTTGCCA 888 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||||||||| || || ||||| Sbjct 889 GTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || || ||||| || || | |||||||||||||| || Sbjct 490 GTAGACTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCA 549 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 ||| |||| | |||||||| || || ||||| ||||| ||||| ||| ||| | ||| Sbjct 550 GCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTC-TTGAATTTTGGCCTT 608 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || |||| | || || || | |||| |||||| || || ||||| Sbjct 609 CACATTTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGT 668 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || || || ||||||||| || Sbjct 669 CTTGACAAAGATCTGCATGCCT 690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||| ||||| || || || ||||| ||| || ||| ||| || || | Sbjct 1621 AAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGACA--GTGTACGGCCATCTTCAA 1678 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| ||| |||| | |||||||| || |||||||| ||||| ||||| ||| Sbjct 1679 GCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCTTCTTTGTC-TTGA 1737 Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| | ||||| | |||| || |||| | ||||| || | ||||| || || Sbjct 1738 ATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCGTCTTT 1797 Query 133632 CCGGTCAG 133639 || || || Sbjct 1798 CCAGTGAG 1805 >seq350 Length=778331 Score = 113 bits (124), Expect = 4e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 |||| || |||||||||||| | ||| | | | ||||||||||| ||||| ||| | Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCA-TCCTCGAGCTGTTTGCCAGCGAAG 635192 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || | || |||||||||||| || |||||||| ||||| |||||| |||| | Sbjct 635191 ATCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTT 635132 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | || || | | ||| || || | ||||| ||||| || || || ||||||||| Sbjct 635131 TCGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACG 635072 Query 133650 AAAATCTGCAT 133660 ||||||||||| Sbjct 635071 AAAATCTGCAT 635061 >seq434 Length=1254451 Score = 111 bits (122), Expect = 2e-19 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||||| || |||||||| || | ||| ||| | || ||||| Sbjct 843879 AAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTGCGACCA-TCTTCGAG 843937 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 843938 CTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCTTTGTC-TTGAA 843996 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||||| | |||| || |||| | ||||| || | ||||| || || | Sbjct 843997 TTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCGTCTTTC 844056 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | || ||||| || || || ||||||||| || Sbjct 844057 CAGTGAGAGTCTTGACAAAGATCTGCATGCCT 844088 Score = 109 bits (120), Expect = 5e-19 Identities = 153/210 (73%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||||||||| ||||| || || || ||| || ||| ||| || |||| Sbjct 844107 AAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACA--GTGTACGGCCATCTTCGA 844164 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| ||| |||| | || ||||| || |||||||| || || ||||| || Sbjct 844165 GCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGA 844224 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 | |||||| |||| | |||| |||||| | | ||||| || | ||||| || || Sbjct 844225 T-TTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACCTCTAAGGTGATCGTCTTT 844283 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || || || ||||||||| Sbjct 844284 CCAGTGAGGGTCTTGACAAAGATCTGCATG 844313 >seq26 Length=4002310 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || | ||||||||| || | ||||| ||||||||||| || ||||||||||| || Sbjct 1472210 GTCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTT 1472269 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||||| | ||||| || || | | ||| || || | || | Sbjct 1472270 GTCTTGAATCTTGGCCTTGACATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAAT 1472329 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| || | |||||| ||||| ||||||||| Sbjct 1472330 GGTCTTGCCAGTTAAAGTTTTAACGAAGATCTGCATG 1472366 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||| || || ||| |||| | ||||||||||| |||||||| || || || Sbjct 1458252 GTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGGATACCCTCTTT 1458311 Query 133565 GTCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || ||| ||| || |||| | ||||| ||||||| | ||| || || | ||||| Sbjct 1458312 ATCCTGGAT-TTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGACCTCTAGGGTGA 1458370 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||| || || || ||||||||||| Sbjct 1458371 TAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAGCT 133515 ||||| ||||| |||||||| |||||||| || || || || | || ||||| | Sbjct 1457976 ATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGACAAGGTTCTACCA-TCTTCGAGTT 1458034 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || || | ||||| ||||||||||| || || || |||||||| || ||| | Sbjct 1458035 GTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATACCTTCCTTATCTTGGATTT 1458094 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | || || | | || || || | ||| | |||||| || | Sbjct 1458095 TAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGACCTCCAAGGTAATGGTTTTACCAG 1458154 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| || ||||| ||||| Sbjct 1458155 TCAATGTTTTAACAAAAATTTGCAT 1458179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483387897171800