Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4393 127 1e-24 seq434 116 2e-21 seq350 89.7 3e-13 seq26 84.2 1e-11 >seq4393 Length=1805 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | |||||| || | |||||| || ||||||||| |||||||| || || Sbjct 688 CCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGAC 747 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| ||| | || || | ||| || || |||||||||||||| ||||||||| | || Sbjct 748 AATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGG 807 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| ||||| || || |||| || | ||||| | || || Sbjct 808 ATACCCTCTTTGTCCTGGATTTT-TGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAAC 866 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || | |||||||||||||| |||||| Sbjct 867 TTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCATA 915 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| || |||||||| || ||| ||| ||||| |||||||| || || Sbjct 1144 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAT 1203 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| |||| || | || ||||||||||||||||| | ||| ||||| | || Sbjct 1204 AGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGA 1263 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||| || |||||| | | || | || | || || | || || Sbjct 1264 ATACCTTCTTTATCTTGAATTTT-GGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAAC 1322 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | || || |||||||||||||| Sbjct 1323 TTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| || || ||||| ||||| || || || || | || || | || Sbjct 483 ATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTG 542 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || ||||||||||||||||||||| | || | |||||||||||| |||||| Sbjct 543 CTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTT 602 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 ||| |||| || | || ||| | ||| || |||| ||||| ||||| || | Sbjct 603 GGCCTTC-ACATTTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAG 661 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || || |||||||||||||| Sbjct 662 TGAGAGTCTTGACAAAGATCTGCAT 686 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || || || || || ||||| || | || || | ||||| || || ||| Sbjct 1408 TCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAA 1467 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||||||||||||||| | || | ||| |||||||| ||||| || || |||| Sbjct 1468 ATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTT-TGCTTTGACATT 1526 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| | ||| || || | ||| || ||||| ||||||| ||||| || Sbjct 1527 TTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAAC 1586 Query 33738 AAAGATCTGCAT 33749 ||| || ||||| Sbjct 1587 AAAAATTTGCAT 1598 Score = 105 bits (116), Expect = 4e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| || |||||||| || || ||| ||||| |||||||| ||||| Sbjct 1600 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAC 1659 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || || | || || || || ||||||||||||||||||||| | || Sbjct 1660 AGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGG 1719 Query 33643 ACACCTTCTTTGTCGGCAATTTT 33665 | |||||||||||| |||||| Sbjct 1720 ATACCTTCTTTGTCTTGAATTTT 1742 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| || || ||||| ||||| |||||| || |||||||| || || Sbjct 232 CCTCCTCGAAGACGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGAC 291 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| ||| | || || | ||| || || |||||||||||||| ||||||||| | || Sbjct 292 AATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGT 351 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| | | || | || | || || | || || Sbjct 352 ATGCCTTCTTTGTCTTGAATTTT-AGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGAC 410 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| || |||| ||||| || |||||||||||| Sbjct 411 TTCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCATA 459 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||||||||| ||||| || || || ||||| || | || || | ||||| || || || Sbjct 951 CTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAA 1010 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||||||||||||| | || | ||||||||| || |||||| | || |||| Sbjct 1011 AATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGAATTTT-AGCTTTGACAT 1069 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||| | || || || | ||||| |||||||| || | ||||| | Sbjct 1070 TCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAA 1129 Query 33737 CAAAGATCTGCAT 33749 |||| || ||||| Sbjct 1130 CAAAAATTTGCAT 1142 >seq434 Length=1254451 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| || |||||||| || ||| ||| || || ||||| || ||||| Sbjct 844086 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 844145 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || || | || || || || ||||||||||| ||||||||| | || Sbjct 844146 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGG 844205 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| ||||| || || |||| || | ||||| | |||||| Sbjct 844206 ATACCCTCTTTGTCTTGGATTTT-TGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCAC 844264 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||||| || || || | || || |||||||||||||| Sbjct 844265 CTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 844312 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||||| || ||||| || ||| ||||||||| || ||||| || || Sbjct 843857 ACCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGA 843916 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | || || || |||||||||| || || || ||| | || Sbjct 843917 AAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGG 843976 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | | || | || | || ||| | ||||| Sbjct 843977 GATACCTTCTTTGTCTTGAATTTT-AGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCA 844035 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||||| || || || | || || |||||||||||||| Sbjct 844036 CCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 >seq350 Length=778331 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| || ||||||||||| || ||||| | || || | ||||| || || || | Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||| | |||||| || | || | ||||||||||| || || | || |||| Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTT-GGCTTTGACATTT 635132 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||| || | || || |||| |||||||||||||| || | |||||||| Sbjct 635131 TCGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACG 635072 Query 33739 AAGATCTGCAT 33749 || |||||||| Sbjct 635071 AAAATCTGCAT 635061 >seq26 Length=4002310 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| ||||| || || || |||||||| || || Sbjct 1458181 CCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 1458240 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| || | ||||| || || ||||||||||||||||| || | || Sbjct 1458241 AGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGG 1458300 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| ||||| || ||||| | || || | || | |||||| || || || Sbjct 1458301 ATACCCTCTTTATCCTGGATTTT-AGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGAC 1458359 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || ||||| |||||||| Sbjct 1458360 CTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| || || ||||| | | |||| || || || || || ||||| Sbjct 1472175 TCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAACTGCTTGCCAGCAAAG 1472234 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||| ||| | || | ||||||||||| ||| || | | |||| Sbjct 1472235 ATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATCTT-GGCCTTGACATT 1472293 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||| || || || || || | || || || || || ||||| ||||| || Sbjct 1472294 CTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCAGTTAAAGTTTTAAC 1472353 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 1472354 GAAGATCTGCAT 1472365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328682186894400