Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4393 105 2e-17 seq26 98.7 2e-15 seq350 86.0 1e-11 >seq4393 Length=1805 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| |||||||| ||||| | || || ||| ||| || Sbjct 683 CAGATCTTTGTCAAGACTCTCACTGGAAAAACCATCACACTTGAGGTTGAAGCTTCCGAT 624 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| || |||||||| |||||||| || || || || Sbjct 623 ACAATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAGCAG 564 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| || |||||| | || ||||| | ||| || | ||||| ||| | Sbjct 563 CGTTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACTCTGTCTGATTATAACATT 504 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||||| || ||||| | ||||||| Sbjct 503 CAGAAGGAGTCTACTCTGCATCTTGTACTCCGACTTCG 466 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || || || ||||| || |||||||||| | ||| Sbjct 215 AAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTCTGACACAATTGAAAAC 156 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || |||||||||||| || ||| ||| |||| || || Sbjct 155 GTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCAACAACGACTGATTTTT 96 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | |||||||| | || || |||| || ||| | ||||| ||||| Sbjct 95 GCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTATAACATTCAGAAGGAGTCC 36 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| | || ||| | || ||| Sbjct 35 ACCCTTCATTTGGTCTTGCGTCTCCGA 9 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| ||||||| || ||||||||| | ||| Sbjct 899 AAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCTGACACAATTGAAAAT 840 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| || || || ||||| || || || || ||| | | || || Sbjct 839 GTCAAAGCAAAA-ATCCAGGACAAAGAGGGTATCCCTCCAGATCAGCAACGTTTGATTTT 781 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| | ||||||||| | || ||| | || |||||| | || |||||||| Sbjct 780 TGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAACATTCAAAAAGAGTC 721 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| || || || || || | |||||| Sbjct 720 TACCCTACATCTCGTATTACGTCTTCGA 693 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || ||||| ||||| ||||||| || ||||| Sbjct 1367 CAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCTGAT 1308 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| || |||||||| |||||||| ||| || || || Sbjct 1307 ACAATTGAAAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAACAG 1248 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || |||||||||||| | ||||| || | || | | || |||||| | Sbjct 1247 AGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACTACAACATT 1188 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||||| || ||||| | || ||| | || ||| Sbjct 1187 CAAAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGA 1149 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || || | ||||| || || || || | ||| Sbjct 443 AAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCAGATACGATTGAAAAC 384 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| |||||||| || || || ||| | | || || Sbjct 383 GTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCAGCAACGTTTGATTTTT 324 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | ||||||||| | || ||| | || |||||| | ||||||||||| Sbjct 323 GCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAACATTCAGAAAGAGTCA 264 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || | |||||| | |||||| Sbjct 263 ACTCTCCATTTAGTTTTGCGTCTTCGA 237 >seq26 Length=4002310 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||||||| |||||||| ||||| || ||| || ||| || | || ||||| || Sbjct 1458557 AAAGCAAAA-ATTCAAGACAAAGAGGGCATTCCTCCAGACCAGCAGCGTCTCATCTTTGC 1458499 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || |||||||| |||||||||||||| | | ||||||||| | ||||| || || || Sbjct 1458498 TGGCAAGCAGTTAGAAGATGGAAGGACGCTTTCTGATTACAACATTCAGAAGGAATCAAC 1458439 Query 206367 TCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||| || | ||||| Sbjct 1458438 ACTCCACCTGGTTCTGCGTCTTCG 1458415 >seq350 Length=778331 Score = 86.0 bits (94), Expect = 1e-11 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||||||||| | || || || |||||| || ||||| Sbjct 635076 AAAACCCTCACGGGTAAAACGATCACCCTTGAGGTTGAGGCTTCTGATACCATCGAAAAT 635135 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||||| || || |||||||| ||| || ||| || || | ||||| Sbjct 635136 GTCAAAGC-CAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAGCAGAGGTTGATCTT 635194 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 ||| || || ||| | || ||||| | ||| | |||||||||| |||| |||| Sbjct 635195 CGCTGGCAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTACAATATCCAAAAAG 635250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181738351379845