Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4393 136 4e-27 seq434 109 5e-19 seq30 89.7 5e-13 seq350 82.4 7e-11 >seq4393 Length=1805 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| ||||| | |||||||||| |||||||||||||| || ||||| | Sbjct 244 CGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGACAATGTACGTCCA 303 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| || || || | | | || | ||| || ||||||||||||||||||||||| Sbjct 304 TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTTG 363 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | ||||| | | ||| ||||| | || | Sbjct 364 TCTTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGACTTCTAGGGTTATT 423 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| |||||||| | ||| |||||||| Sbjct 424 GTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCAT 458 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||||||||| ||||| | |||||| |||||||||||||||||| | Sbjct 949 GACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCG 1008 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | |||||| ||||| ||||| || ||||||||||| |||||| ||| | Sbjct 1009 AAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGAATTTTAGCTTTGACA 1068 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | ||| ||||| | || | ||||||||||| |||||||| Sbjct 1069 TTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTA 1128 Query 132110 ATGAAAATCTGCATGACT 132127 | ||||| |||||| || Sbjct 1129 ACAAAAATTTGCATGCCT 1146 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | ||||| || |||||||| |||||| || ||||| | Sbjct 16 CGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCA 75 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||||||||| || || | | | || || || ||||| |||||||| || ||||||||| Sbjct 76 TCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTA 135 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | ||| | || || | | ||| ||||| | || | Sbjct 136 TCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATA 195 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 |||||||| || |||||||||| ||||| |||||| || Sbjct 196 GTTTTACCGGTAAGAGTTTTTACAAAAATTTGCATGCCT 234 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | ||||| ||||||||||||||||| | || ||| Sbjct 1156 CGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTGCGCCCG 1215 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | | || | | ||||||||| ||||| || ||||||||| Sbjct 1216 TCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTA 1275 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | ||||| | | ||| ||||| | || | Sbjct 1276 TCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATG 1335 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| ||||| ||||| || | || ||||||||| Sbjct 1336 GTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCATG 1371 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || | ||||| | | ||||||||||||||||||||||| || ||||| | Sbjct 700 CGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCA 759 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| || || || | | | || | ||| || ||||||||||| || || ||||| Sbjct 760 TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTG 819 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | || || | | ||| ||||| | || | Sbjct 820 TCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATG 879 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| |||||||||| || || ||||| Sbjct 880 GTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | ||||| |||||||||||||||||| || ||||| | Sbjct 1612 CGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGACAGTGTACGGCCA 1671 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | || | |||||| ||||||||||| || |||||||| Sbjct 1672 TCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCTTCTTTG 1731 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | ||||||| | ||||| || | || | | Sbjct 1732 TCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATC 1791 Query 132089 GTTTTACCAGTCAG 132102 || || ||||| || Sbjct 1792 GTCTTTCCAGTGAG 1805 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || ||||| | |||||| |||||||||||||||||| | Sbjct 1405 GATTCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCG 1464 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | |||||| ||||||||||| || || ||||| || |||||| ||| | Sbjct 1465 AAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACA 1524 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | | || ||||| | ||| | ||||| || || || ||||| Sbjct 1525 TTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTA 1584 Query 132110 ATGAAAATCTGCATGACT 132127 | ||||| |||||| || Sbjct 1585 ACAAAAATTTGCATGCCT 1602 >seq434 Length=1254451 Score = 109 bits (120), Expect = 5e-19 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA- 131967 || ||||| ||||| | | |||||||||||||| ||||||| || | || |||| Sbjct 843870 CGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGT--CTGAAAGTGTGCGAC 843927 Query 131968 -ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTT 132026 |||||||||||| || || | | | || || || ||||| |||||||| || ||||||| Sbjct 843928 CATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCTT 843987 Query 132027 TATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCA 132086 | || |||||| || | | ||| | ||||||| | ||||| || | || | Sbjct 843988 TGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGA 844047 Query 132087 GCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| || ||||| ||||| || | || ||||||||| || Sbjct 844048 TCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATGCCT 844088 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | ||||| || |||||||| |||||| || ||||| | Sbjct 844098 CGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCA 844157 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||||||||| || || | | || | ||| || ||||||||||| || || ||||| Sbjct 844158 TCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTG 844217 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | || || | | ||||| || | || | | Sbjct 844218 TCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACCTCTAAGGTGATC 844277 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || || || | || ||||||||| Sbjct 844278 GTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCATG 844313 >seq30 Length=3281913 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 46759 TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCA 46818 ||||||| ||| ||||| ||| | ||||| | || ||||| | |||| ||| | Sbjct 991470 TGCCATGTGTTACTAAAAAAGCCAACTGGGCTCTCAACTGGATTAGCAATGAGAGCGCTA 991529 Query 46819 CGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTT 46878 | | ||||| || | | || ||||| ||||||||| | ||||| ||||||| Sbjct 991530 CATTTGCCGAACGTGTTATTGCTTTCGCTGCAGTCGAAGGTATCTTTTTCAGTGGCAGTT 991589 Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938 |||| || ||||||| | |||| ||| | |||||||| || || |||||||||| Sbjct 991590 TTGCAGCTATTTTTTGGCTGAAAAAGCGAGGACTCATGCCGGGTCTTACCTTCAGTAACG 991649 Query 46939 AGTTGATCTCGCGCGACGA 46957 | | ||||| ||||| || Sbjct 991650 AACTCATCTCTCGCGATGA 991668 >seq350 Length=778331 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 ||||||| || ||||| ||| | || || ||| ||||||||||| || | ||| Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | | | ||| || || || || ||||||||||| || || || ||| | | || Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | ||||| | | ||| || || | || | ||||||||| || || ||||||| || Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 132114 AAATCTGCAT 132123 |||||||||| Sbjct 635070 AAATCTGCAT 635061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476578760650200