Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq26 114 1e-20 seq4393 113 4e-20 seq434 113 4e-20 >seq26 Length=4002310 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || || ||| | || || | || |||||||| Sbjct 1458179 ATGCAAATTTTTGTTAAAACATTGACTGGTAAAACCATTACCTTGGAGGTCGAAGCTTCA 1458120 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || || ||||| ||||| || ||||| || || || ||| Sbjct 1458119 GATACCATCGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGTATTCCCCCTGACCAG 1458060 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || | ||||| | | || |||||||||||||||| ||||| |||||| | |||| Sbjct 1458059 CAGCGTCTCATCTTTGCTGGAAAACAACTCGAAGATGGTAGAACCTTGTCAG--ACTACA 1458002 Query 25353 ATATTCAAAAAGAATCCAC 25371 |||| || ||||||||||| Sbjct 1458001 ATATCCAGAAAGAATCCAC 1457983 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || ||||| | ||||| | || ||||| || | Sbjct 1458407 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTAGAGGTCGAGGCATCC 1458348 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| ||| | || ||| ||||| |||||||||||||| || || || ||| Sbjct 1458347 GACACTATTGAGAACGTCAAAGCTAAAATCCAGGATAAAGAGGGTATCCCTCCGGACCAG 1458288 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| || || ||||| ||||| || | |||| | | || ||||| Sbjct 1458287 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAGGACGGCAGAACTCTTTCTGACTACAAC 1458228 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||| || ||||| || ||||| Sbjct 1458227 ATTCAGAAGGAATCTACTCTTCAT 1458204 >seq4393 Length=1805 Score = 113 bits (124), Expect = 4e-20 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| |||| |||||| | || ||| | |||||||||||| Sbjct 1599 CATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTC 1540 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| |||||| || ||||||||||| || || ||||| Sbjct 1539 AGACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCA 1480 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 ||| | | |||| || || ||||| |||||||||| | | | ||| || || Sbjct 1479 GCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCA--GACTAT 1422 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||||||||||| || | ||| | ||| Sbjct 1421 AATATTCAAAAAGAATCTACACTCCATCTTGTG 1389 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || || ||| | ||||| | ||||| || ||| Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| |||||| || ||||||||||| || || |||||| Sbjct 854 GACACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATCAG 795 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 ||| | | |||| | ||||| ||||||||||||| | | |||| || |||| Sbjct 794 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTC--GGACTACA 737 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | ||||||||||| || ||| | ||| | || ||| | | ||||||| Sbjct 736 ACATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGG 688 Score = 104 bits (114), Expect = 2e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| | || || ||| | ||||| | |||||||| ||| Sbjct 1143 CATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTC 1084 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || ||| | || ||| |||||| |||||||| ||||| || |||||||| Sbjct 1083 CGACACGATTGAGAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCTCCCGATCA 1024 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 ||| | | |||| || || ||||| |||||||||| | | | ||| || || Sbjct 1023 GCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCA--GACTAT 966 Query 25352 AATATTCAAAAAGAATCCAC 25371 || ||||||||||| || || Sbjct 965 AACATTCAAAAAGAGTCTAC 946 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||||||||| | ||||| ||| | || || | |||||||| || Sbjct 231 CATGCAAATTTTTGTAAAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTC 172 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || ||||| |||||||| || || || || || || Sbjct 171 TGACACAATTGAAAACGTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCA 112 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 ||| |||| |||| | ||||| || |||||||||| | | |||| ||| || Sbjct 111 ACAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTC--CGACTAT 54 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || ||||| || || |||||| ||||||| || || Sbjct 53 AACATTCAGAAGGAGTCCACCCTTCATTTGGTCTT 19 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| |||| || ||| | || || | |||||||| ||| Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| || ||||| || ||||| || |||||| Sbjct 398 GATACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCAG 339 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 ||| | | |||| | ||||| ||||||||||||| | | |||| || |||| Sbjct 338 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTC--GGACTACA 281 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 | ||||| ||||| || || | |||||||| || Sbjct 280 ACATTCAGAAAGAGTCAACTCTCCATTTAGTTTT 247 >seq434 Length=1254451 Score = 113 bits (124), Expect = 4e-20 Identities = 172/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || | || ||||| ||||||| | || || ||||| Sbjct 844085 CATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTC 844026 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| || || | || || |||||| || ||||| ||||| || || || || Sbjct 844025 CGATACAATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGACCA 843966 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| |||| |||| | ||||| || |||||||||| | | | | |||| | ||| Sbjct 843965 ACAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACACTTTCAG--ACTAC 843908 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCA 25411 |||||||||||||| ||||| |||||||||| ||| || | |||| || ||| | | Sbjct 843907 AATATTCAAAAAGAGTCCACACTTCATTTAGTTTTACGACTTCGAGGTGGTCAATTCTAA 843848 Query 25412 TTC 25414 ||| Sbjct 843847 TTC 843845 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 |||||||| | ||||| || || | || ||||| ||||||| | || || ||||| Sbjct 844315 AACATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCT 844256 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || || || | || ||| |||||| || ||||||||||| || || ||| Sbjct 844255 TCTGACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGAT 844196 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATT 25349 |||||| | | |||| || ||||| || |||||||||| | | |||| ||| | Sbjct 844195 CAGCAACGTTTGATTTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTC--CGACT 844138 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 | || ||||| || || |||||| ||||||| || || Sbjct 844137 ATAACATTCAGAAGGAGTCCACCCTTCATTTGGTCTT 844101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445064105762400