Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq350 136 6e-26 seq223 105 1e-16 seq109 100 4e-15 seq78 100 4e-15 seq64 93.3 6e-13 seq362 87.8 3e-11 >seq350 Length=778331 Score = 136 bits (150), Expect = 6e-26 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| | |||||||||||||| |||| || ||||||||| | || Sbjct 404836 ATCTACAAGGTCTTGAAGCAGGTGCACCCGGACACCG---GGGTATCCTCCAA---GGCC 404889 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||| || ||||||||||| | || ||||||| ||| || ||| | Sbjct 404890 ATGTCCATCATGAACAGCTTCGTCAACGACATCTTTGAGCGCATCGCCACGGAAGCCTCT 404949 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| | || ||||||| | || ||| | || ||||||||||| || ||| Sbjct 404950 CGCTTGGCACACTACAACAAGAGGTCGACCATCACATCCCGGGAGATCCAGACGGCAGTG 405009 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| ||||| |||| || ||||||||||| ||||||| Sbjct 405010 AGGCTTCTGCTTCCCGGTGAACTTGCCAAACATGCCGTCTCCGAAGGCACCA 405061 Score = 136 bits (150), Expect = 6e-26 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| | |||||||||||||| |||| || ||||||||| | || Sbjct 428363 ATCTACAAGGTCTTGAAGCAGGTGCACCCGGACACCG---GGGTATCCTCCAA---GGCC 428416 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||| || ||||||||||| | || ||||||| ||| || ||| | Sbjct 428417 ATGTCCATCATGAACAGCTTCGTCAACGACATCTTTGAGCGCATCGCCACTGAAGCCTCT 428476 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| | || ||||||| | || ||| | || ||||||||||| || ||| Sbjct 428477 CGCTTGGCACACTACAACAAGAGGTCGACCATCACATCCCGGGAGATCCAGACGGCAGTG 428536 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| ||||| |||| || ||||||||||| ||||||| Sbjct 428537 AGGCTTCTGCTTCCCGGTGAACTTGCCAAACATGCCGTCTCCGAAGGCACCA 428588 Score = 136 bits (150), Expect = 6e-26 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| | |||||||||||||| |||| || ||||||||| | || Sbjct 506050 ATCTACAAGGTCTTGAAGCAGGTGCACCCGGACACCG---GGGTATCCTCCAA---GGCC 506103 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||| || ||||||||||| | || ||||||| ||| || ||| | Sbjct 506104 ATGTCCATCATGAACAGCTTCGTCAACGACATCTTTGAGCGCATCGCCACGGAAGCCTCT 506163 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| | || ||||||| | || ||| | || ||||||||||| || ||| Sbjct 506164 CGCTTGGCACACTACAACAAGAGGTCGACCATCACATCCCGGGAGATCCAGACGGCAGTG 506223 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| ||||| |||| || ||||||||||| ||||||| Sbjct 506224 AGGCTTCTGCTTCCCGGTGAACTTGCCAAACATGCCGTCTCCGAAGGCACCA 506275 >seq223 Length=1488657 Score = 105 bits (116), Expect = 1e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || || ||||| || |||||||||||||| | || | | | | |||||||| | || Sbjct 703123 ATTTATAAGGTCCTGAAGCAGGTGCACCC--GGACACTGGAGTC-TCCTCCAA---GGCC 703070 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||| || || |||||||| |||| ||||| | |||| || | Sbjct 703069 ATGTCGATAATGAACAGCTTCGTGAACGACATCTTCGAGCGCATAGCTGCCGAAGCTTCT 703010 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||||| | || ||||||| | || || | | || |||||||| || || || Sbjct 703009 CGCCTGGTCCACTACAACAAGAGATCGACCATTACCTCTCGGGAGATCCAAACGGCTGTT 702950 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | | | || ||||| |||| |||||||||||||| ||||| Sbjct 702949 CGGCTCCTACTTCCTGGTGAACTTGCCAAACACGCCGTCTCCGAAGGCAC 702900 Score = 105 bits (116), Expect = 1e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || || ||||| || |||||||||||||| | || | | | | |||||||| | || Sbjct 1163664 ATTTATAAGGTCCTGAAGCAGGTGCACCC--GGACACTGGAGTC-TCCTCCAA---GGCC 1163611 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||| || || |||||||| |||| ||||| | |||| || | Sbjct 1163610 ATGTCGATAATGAACAGCTTCGTGAACGACATCTTCGAGCGCATAGCTGCCGAAGCTTCT 1163551 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||||| | || ||||||| | || || | | || |||||||| || || || Sbjct 1163550 CGCCTGGTCCACTACAACAAGAGATCGACCATTACCTCTCGGGAGATCCAAACGGCTGTT 1163491 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | | | || ||||| |||| |||||||||||||| ||||| Sbjct 1163490 CGGCTCCTACTTCCTGGTGAACTTGCCAAACACGCCGTCTCCGAAGGCAC 1163441 >seq109 Length=1464684 Score = 100 bits (110), Expect = 4e-15 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || |||||| || | || ||| |||| | Sbjct 414156 ATCTACAAGGTGTTGAAGCAAGTCCACCCCGACACTGGTG------TCTCTTCCAAGGCG 414209 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||| ||||| |||| || |||| | ||||||| | Sbjct 414210 ATGAGCATCATGAACAGCTTCGTCAATGACATCTTCGAGCGTATCGCCTCCGAGGCTTCT 414269 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | | ||||||| | ||| ||| | | || || || ||||| |||||| Sbjct 414270 CGCCTGGCCCATTACAACAAGAGGTCCACCATCACCTCCCGGGAAATTCAGACAGCCGTG 414329 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| || ||| |||| | ||||||||| || || || |||| Sbjct 414330 AGGCTCTTACTGCCTGGTGAATTGGCTAAGCACGCCGTTTCTGAAGGAACCA 414381 >seq78 Length=1593723 Score = 100 bits (110), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || |||||| || | || ||| |||| | Sbjct 875145 ATCTACAAGGTGTTGAAGCAAGTCCACCCCGACACTGGTG------TCTCTTCCAAGGCG 875198 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||| ||||| |||| || |||| | ||||||| | Sbjct 875199 ATGAGCATCATGAACAGCTTCGTCAATGACATCTTCGAGCGTATCGCCTCCGAGGCTTCT 875258 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | | ||||||| | ||| ||| | | || || || ||||| |||||| Sbjct 875259 CGCCTGGCCCATTACAACAAGAGGTCCACCATCACCTCCCGGGAAATTCAGACTGCCGTG 875318 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || | ||| || ||| | || | ||||||||| || |||||||| Sbjct 875319 AGGCTCTTATTGCCTGGTGAATTAGCTAAGCACGCCGTTTCTGAGGGCAC 875368 Score = 95.1 bits (104), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| | ||||| || |||||| || | || | ||| ||| | Sbjct 1476759 ATTTACAAGGTATTAAAGCAAGTCCACCCCGACACTGGTGTCTCTTCC------AAGGCG 1476812 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| |||| || |||| | | ||||| | Sbjct 1476813 ATGAGCATCATGAACAGCTTCGTCAACGACATTTTCGAGCGTATCGCCTCAGAGGCTTCT 1476872 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | | ||||||| | ||| ||| | | || || || ||||| |||||| Sbjct 1476873 CGTCTGGCCCATTACAACAAGAGGTCCACCATCACCTCCCGGGAAATTCAGACTGCCGTG 1476932 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| || ||| |||| | ||||||||| || |||||||||| Sbjct 1476933 AGGCTCTTATTGCCTGGTGAATTGGCTAAGCACGCCGTTTCTGAGGGCACCA 1476984 >seq64 Length=1863977 Score = 93.3 bits (102), Expect = 6e-13 Identities = 153/216 (71%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 1600520 AAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCC 1600579 || |||||| |||| || | | |||| | | | ||| |||||| ||| | ||| Sbjct 1818980 AACGGCGTGGCGTCACCGATTTCTCCCTTGTTTGACGACACTTTGCCCTGGATGCACTCG 1819039 Query 1600580 ATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGC 1600639 |||| | ||| || |||||||| ||||| |||||||| || ||||| | ||||| || Sbjct 1819040 ATCAAGTGGCCAATCGTCATGCGGGACGGAATGGCGTGGGGATTGATGATGATGTCCGGG 1819099 Query 1600640 GTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTCG-GTGGAGCGCACGCTGCCCACGGT 1600698 ||| ||| ||| ||| || | ||||||||||| || | | || |||| ||| Sbjct 1819100 GTGATACCCTCGC-AGGTGAAC--GGCATGTCCTCCTGTCG-GTACAGCATGCCACAGGT 1819155 Query 1600699 GCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCC 1600734 ||||||||| ||||| ||||||| | ||||| || Sbjct 1819156 GCCCTTTTGACCGTGACGCGACGCAAACTTGTCACC 1819191 >seq362 Length=962489 Score = 87.8 bits (96), Expect = 3e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| || || || || | || | | ||| ||| || Sbjct 372280 ATCTACAAGGTGCTGAAGCAAGTTCATCCTGATACGGGTGTGTCGTCC------AAGGCC 372333 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| |||||||||||||| |||| ||||| | | | || || | Sbjct 372334 ATGAGCATCATGAACAGTTTTGTCAACGACATCTTCGAGCGCATTGCCTCTGAAGCATCT 372393 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | |||||| | || || | || || | ||||| |||||| Sbjct 372394 CGCCTTGCTCATTATAACAAGAGGTCAACTATTACATCCCGGGAAGTTCAGACTGCCGTG 372453 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || | | | |||||||| |||| ||||||||||||||| || || Sbjct 372454 AGACTATTGCTTCCTGGCGAACTCGCCAAGCACGCCGTCTCCGAAGGGAC 372503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177286019742090