Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq26 109 5e-19 seq4393 102 7e-17 seq350 91.5 1e-13 seq363 82.4 7e-11 >seq26 Length=4002310 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | || |||| ||| | ||| ||||| ||||||||||| || | Sbjct 1458179 TTCCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAG 1458238 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| |||| || ||||| ||||| || || ||||| ||||||||||||| || Sbjct 1458239 AAAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAG 1458298 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCC 35686 | | | ||| || ||| ||| ||| |||| ||| | | |||||| | || Sbjct 1458299 GGATACCCTCTTTATCCTGGAT-TTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCG 1458357 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| | ||||| || || || ||||| || || ||||| |||||||||| Sbjct 1458358 ACCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCATTC 1458409 >seq4393 Length=1805 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584 || || | ||||| ||| ||| |||||||||||||| || | ||| || || | || Sbjct 703 AATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCATCT 762 Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 || || ||||| || ||||| ||||| || ||||| || | ||| | | ||| |||||| Sbjct 763 TCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCC 822 Query 35645 ATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 ||| |||||| || | | || | | ||||| | || || |||| ||||| || Sbjct 823 TGGAT-TTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATGGT 881 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || | |||||| ||||| || ||||| Sbjct 882 TTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||| ||||| | || || ||| | || || ||||||||||| || || Sbjct 495 CTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAA 554 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 ||||| |||||||| || | || | | || |||| | ||| ||| | ||||| | Sbjct 555 AATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGT-CTTGAATTTTGGCCTTCACAT 613 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| | ||| ||||| | ||||| ||||| || || | ||| || | Sbjct 614 TTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGA 673 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 674 CAAAGATCTGCAT 686 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| |||||||| | ||| |||||||||||||||||| |||| || || || | || Sbjct 1614 CAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGACAGTGTACGGCCATC 1673 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || |||||||| || || || ||||| |||||||| || | ||| | | || |||| Sbjct 1674 TTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCTTCTTTGT- 1732 Query 35644 CATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | ||| ||| | ||| | || | | || ||| | ||||||||| | ||||||| Sbjct 1733 CTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCG 1792 Query 35703 TTTTACCCGT 35712 | || || || Sbjct 1793 TCTTTCCAGT 1802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||||||||| || || | | || ||| | || || ||||| ||||| || || Sbjct 951 CTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAA 1010 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||| |||||||| || | ||| | | || || ||| ||| ||| || || | | Sbjct 1011 AATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCC-TGAATTTTAGCTTTGACAT 1069 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||||| | || || || | ||||| |||||||| || | |||||| | Sbjct 1070 TCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAA 1129 Query 35724 CAAATATCTGCAT 35736 |||| || ||||| Sbjct 1130 CAAAAATTTGCAT 1142 >seq350 Length=778331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 ||||| || |||||||||| | || || | || || ||||| || || || || ||| Sbjct 635248 TTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATC 635189 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 |||| ||||||||| | |||| || || |||||| |||||| || | | || | Sbjct 635188 AACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCG 635129 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | || || | || ||||| | ||||||||||||||||| | ||||| || || Sbjct 635128 ATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGAAA 635069 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 635068 ATCTGCAT 635061 >seq363 Length=475187 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44305 TAGGATGTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCT 44364 |||||||||||||||||||||| ||| | || ||| | |||| ||||| | || | | Sbjct 306017 TAGGATGTATGTGGTCCATTTGTGGTATTCATGACCAAGGGTGGAGAGAGAGATCCGTTT 305958 Query 44365 ACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTA 44417 |||||| | ||||||||||| || | |||||| | |||||| |||||| Sbjct 305957 TTGGCAAAATTCGCTACATGAATTATGAAGGTTGCAAGAAAAAGTTCGATGTA 305905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450762917860600