Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq203 149 9e-31 seq30 111 2e-19 seq2 107 3e-18 >seq203 Length=886859 Score = 149 bits (164), Expect = 9e-31 Identities = 279/410 (68%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 69259 AACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATAT 69318 ||||| || | || | ||||||| ||| ||||||||||| |||| | | || Sbjct 356516 AACATGTTGACGGCAATGGATGCTAAATTGCAAACTGCTACTTCATCCGGTGAGGAGTAC 356575 Query 69319 TGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTC 69378 || | |||||| ||||| | ||||| | | |||| || ||||||||||||||||| | Sbjct 356576 TGCACTATCTCGGTACACAAGTTACTGCTTCTGATGGTGCCCAGATTTTGCTGATTCGAC 356635 Query 69379 TTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCG 69438 || ||| ||| ||| |||||||| ||| | || || |||||||||| ||||| | Sbjct 356636 TTGCGGTTGCAGTGGTCTTTGTAAAGCATATAAGGCGTTCCAGTTTCAACTTGAGACTTC 356695 Query 69439 ATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCA 69498 | ||||| |||| | || |||| | | ||||||| | | | | |||| Sbjct 356696 AGAATAGCCGTCCACAGCGTTCTGGCATCGACTTGCTTCTTGTATTTTTGCCCCTCTTCA 356755 Query 69499 TATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCA 69558 ||| || || | ||| || ||| | |||||||| || |||||||||||| || Sbjct 356756 TATGTGGTGTACAATTTTTCAAACTCAGCGCCCCAAACGTCGGGCAATCCAGGACACTCT 356815 Query 69559 TTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGA 69618 || |||||||| | |||| |||| || ||||| || ||| || | || || Sbjct 356816 TTGGGACACATGAGACTCCACTTTTCATTATTTAAAACTCTTTGCATGAACAAGTCTGGG 356875 Query 69619 ATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 ||||| ||||| ||| ||||| || | |||| ||||| || ||||| Sbjct 356876 ATCCACAGAGCGTAAAATAGATCCCTTGCTCTACGCTCTTCTTTACCTGT 356925 Score = 116 bits (128), Expect = 5e-21 Identities = 178/248 (72%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 68683 TCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTA 68742 || |||| | || | | |||||| |||||||| || || |||||||| || | || | Sbjct 355772 TCAGTTAGATCTTTCAAGAGATGAGGATTAACAATCTGGAATTCCCCGGAAAGTACGCGT 355831 Query 68743 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCA 68802 | ||| |||||||| ||||||||||| || || |||||||| || |||||||| || Sbjct 355832 CTTTGGTAGATATTACTCGTATATGGTTCAACTGACTCATTATTGCCAAGAATTTGGGCC 355891 Query 68803 GTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATG--A 68860 || ||||| |||||||| || | || || | | | || |||| ||||| | | Sbjct 355892 GTCGATGCTGTTGGCATCGGAG-CAAGAAGCAGCGAGTT-GCGGACCCCGTGTTGGGCTA 355949 Query 68861 TTTTATCTTTTA--GATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATC 68918 |||| |||| | |||| ||| | ||||||||||| ||| ||||||||| | ||| Sbjct 355950 TTTTGGCTTTCAAGGATG--ACCAGTTCCAAAGATCAGTTGGAGTAACATTCCACATATC 356007 Query 68919 GTATTGTA 68926 || |||| Sbjct 356008 ATACTGTA 356015 Score = 114 bits (126), Expect = 2e-20 Identities = 210/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 || ||||||||||| ||||| || || || | | ||| | ||||||||| || | || Sbjct 356986 CCAGTATTTTTTTTTAGATCAAGGAATTCAAATACATCGGCATGCCATGGCTCCAAGTAA 357045 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 || || | | || |||| || || ||||||||||| | || | ||| || || || Sbjct 357046 ATGGCAAATGCCCCTGGTCTCTTGTTACCTCCCTGATCAACATAGCAGGCTGTATTGTTG 357105 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 | ||||| ||||| |||| | ||||| || ||||||| || |||| ||| | | Sbjct 357106 AAAACTCTTAGCATTGGAACTAACCCATTTGAAATACCATTGGTACCAGCAATTTTGGTG 357165 Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 || | || ||||| || | | ||||| || |||||||| |||| |||| Sbjct 357166 CCAGTCGCACGAATGTTGTGTACACTGAGACCAATGCCTCCTGCTGATTTACTAATTACG 357225 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 ||||| | ||| || || ||| | || || || || || || ||| |||| | || | | Sbjct 357226 GCACATCTTTTTAAAGTATCAAAAATTCCTTCGATACTGTCGTCTGTCATTGTTAGCAAA 357285 Query 69964 AAACAGCT 69971 ||||| || Sbjct 357286 AAACAACT 357293 Score = 113 bits (124), Expect = 6e-20 Identities = 190/275 (69%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || ||||| || || || ||| | ||| ||| | || ||||| || || || || Sbjct 357363 CTGGACATCTGTTGGCGTTGAGTACAGGCAGAAAAAAGCGTTGGAGACGCATGTGTAAAG 357422 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 | ||||| | | ||||| ||||| ||| || || | ||| || || || Sbjct 357423 TAACGCTCAGACATGAAGTTGTAAGTTTCTATAACTTTGTCAAGATCTTCCTTGTGGATG 357482 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTC 70149 | | || || ||||| | |||||||||||| ||||| || ||||| ||| ||||| Sbjct 357483 GCAACAGCAACTCGCATTATCATATGCTGAGGACGTTCAACTACTTTATCATTAATTTTT 357542 Query 70150 AACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCG 70209 || || || | | || | ||||||||| |||||||| ||||| ||||||||| || Sbjct 357543 AAAAGATAGCTTCTCTCTAAAGTTTTAAATCCAAAATAATTGTAACCAAAGTCTCTATCA 357602 Query 70210 TAAATAATAACAGAATTTAGTTTATCCTTATATTT 70244 ||||| || ||||||| ||| ||||||| | ||| Sbjct 357603 TAAATGATGGCAGAATTCAGTCTATCCTTGTGTTT 357637 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 68978 GTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCT 69037 ||| ||| | ||||| || ||||| | || ||||| || | ||||||||||||| Sbjct 356146 GTTGAGCCAACTCACAGCTGGCCTCCAGAGCGCCGTAGTACAAGGTTTCGAAAATCTGAA 356205 Query 69038 TATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTG 69097 ||||||| | ||| |||| | ||| || |||||| || | | || | |||||||||| Sbjct 356206 TATTGAGCTTTTGAGCTTTTTCACTTTCAAATGGAAAACGCATCAGCAAGAATGCATCTG 356265 Query 69098 CCAATCCCTGAACCCCAATACC 69119 ||||||| |||| |||||||| Sbjct 356266 CCAATCCTTGAATGCCAATACC 356287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 68442 CCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATT 68501 ||| || ||||| ||||| |||||||| |||| | || || || || || Sbjct 355468 CCAGCCATAGAAGTGCATTGAAGTTAGTTTTTCTGGTGTTGGCTGAGCCATGTGTATGTT 355527 Query 68502 CATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTT 68561 | |||||| ||||| || ||||||||||| || || |||||||||| ||| |||| Sbjct 355528 GAGAGATTGAGACTGATCAATAAAAGCTCCTCTGTCCGCAGCCATTTTTAAAATTGTCTT 355587 Query 68562 TTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 ||||| ||||||||||| ||| || | | || ||| | ||||| || Sbjct 355588 TTGAGAAATTTCCCAAACAGTTTTGTACAGCTCTTTTAAGTCATCGGG 355635 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| |||| ||| || ||||| |||||||||||||||| ||||||||||| || | | Sbjct 357809 CACTGAATACTTTCTTGGTTTCTTTGTGTAAATTTGATACTGCTATTCTGGCGGCCAATA 357868 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||| || | |||| || || ||||| || | || || || | |||| | Sbjct 357869 TAGCATAATCTGCGTGTTTGGTTGTCATCGTAGCAGCAGTCTCTGCTGCCAGGTTATCAA 357928 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAAC 70493 ||| | ||||| ||||| ||| ||||| | ||||| Sbjct 357929 GTTCCACTGTTGTGACTCCAGAATAAAGCCCATTGATAAC 357968 >seq30 Length=3281913 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||| ||||||||||||||||| || || || || || || || || || | || || Sbjct 991322 TACATCTCTGAATGGATGTTTTCTATGGCAATTTGGAAACCATAGAAGCAACGAGCCTCT 991263 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 |||| |||||| ||| || || |||||| | ||||| ||||| || || ||||| Sbjct 991262 GTAACTTGTACTTCTTGACTGAACCTTTCCACTAAATTCTCATTGACAATGCCATCTGAG 991203 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTC 40087 || || |||||||||||||| || || || | ||| ||||| | |||| || | | Sbjct 991202 GCAGCGAAAAATGCCAATACGTGCGAGATGAAGTGTTTCTCATCTGTGTTCAACTTTTGC 991143 Query 40088 CAGTCATTGATATC 40101 ||||| || | ||| Sbjct 991142 CAGTCTTTAAGATC 991129 >seq2 Length=6207162 Score = 107 bits (118), Expect = 3e-18 Identities = 253/381 (66%), Gaps = 1/381 (0%) Strand=Plus/Plus Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 |||||||||||| | || | ||||||| ||| || ||||| || |||| | | Sbjct 5338117 AACAAACATATTAACGGCGATGGATGCTAAATTGCACACTGCCACTTCATCCGGTGAGGA 5338176 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||||| ||||| ||||| | || || | ||||| || |||||||| |||||||| Sbjct 5338177 GTATTGTACGATCTCAGTACACAAGTTGCTGCTCTTGATGGTGCCCAGATTCTGCTGATT 5338236 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 |||| || ||| |||||||||||| || |||| | |||||||| | |||||| Sbjct 5338237 TGACTTTCGATTGCAGTGGTCCTTGTAAAGCATGTACGGCATTCCAGTTTCCACCTGAGA 5338296 Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTT 69494 | | || | |||| | ||| || | ||| ||||| | || | Sbjct 5338297 ATTCAGGATCGCCGTCCACAGCTTCCTGGCGTCGATTTGCTTCTTGAATTTGCCGTCACT 5338356 Query 69495 TTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACA 69554 || || | | || | || ||||| || | |||||| ||||||| |||||| ||||| Sbjct 5338357 CTCGTACTTTTCGTACAATCGGTCGAAATCGTTTCCCCAGACATCATGCAATCCGGGACA 5338416 Query 69555 TTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATC 69614 | | || ||||| | |||| | | ||| ||| | ||||| || | ||| Sbjct 5338417 CTGTTGCGGGCACATGAGGCTCCACTTGCCGTTGTCCAAAACCCTCTTCATGAACAAATC 5338476 Query 69615 GGGAATCCAAAGAGCTATAAA 69635 || ||||||||||| ||||| Sbjct 5338477 TGGGATCCAAAGAGC-ATAAA 5338496 Score = 107 bits (118), Expect = 3e-18 Identities = 316/483 (65%), Gaps = 13/483 (3%) Strand=Plus/Plus Query 69162 AGGATAATAATTAATATCTATAATTTTATTAAGAT--TTCGGACTACTACTTTAACCACG 69219 |||||| || || | ||||||||||||| | || |||| || ||||| ||| Sbjct 5349317 AGGATAGTAGTTTAGGTCTATAATTTTATCTAAATCCTTCGTGATA--ACTTTGGCCATT 5349374 Query 69220 TCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATAACAAACATATTCAGTGC 69272 ||||| | ||| |||| | | | |||| || |||||||||||| | || Sbjct 5349375 TCCTTCAATTTATTGAAATTATACAATTTTTTGTCCG-CTGCAACAAACATATTAACGGC 5349433 Query 69273 TACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGT 69332 | ||||||| ||| || ||||| || |||| | | ||||||| ||||| || Sbjct 5349434 GATGGATGCTAAATTGCACACTGCCACTTCATCCGGTGAGGAGTATTGTACGATCTCAGT 5349493 Query 69333 ACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGC 69392 ||| | || || | ||||| || |||||||| |||||||| |||| || ||| Sbjct 5349494 ACACAAGTTGCTGCTCTTGATGGTGCCCAGATTCTGCTGATTCGACTTTCGATTGCAGTG 5349553 Query 69393 GTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 |||||||||||| || |||| | |||||||| | |||||| | | || | |||| Sbjct 5349554 GTCCTTGTAAAGCATGTACGGCATTCCAGTTTCCACCTGAGACTTCAGGATCGCCGTCCA 5349613 Query 69453 AACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAG 69512 | ||| || | ||| ||||| | || | || || | | || | Sbjct 5349614 CAGCTTCCTGGCGTCGATTTGCTTCTTGAATTTGCCGTCACTCTCGTACTTTTCGTACAA 5349673 Query 69513 CCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAA 69572 || ||||| || | |||||| ||||||| |||||| ||||| | | || ||||| | Sbjct 5349674 TCGGTCGAAATCGTTTCCCCAGACATCATGCAATCCGGGACACTGTTGCGGGCACATGAG 5349733 Query 69573 TGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT 69632 |||| | | ||| ||| | ||||| || | ||| || ||||||||||| || Sbjct 5349734 GCTCCACTTGCCGTTGTCCAAAACCCTCTTCATGAACAAATCTGGGATCCAAAGAGC-AT 5349792 Query 69633 AAA 69635 ||| Sbjct 5349793 AAA 5349795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686862047269800