Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq23 118 8e-22 seq30 104 2e-17 seq51 98.7 8e-16 >seq23 Length=2853459 Score = 118 bits (130), Expect = 8e-22 Identities = 203/291 (70%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || ||| ||||| || || || || | |||||||||| ||| ||||| Sbjct 2808728 ATTGGTGGCTTGGACAAAGAATTCAATGCTATTTTCAGAAGAGCATTTGCGTCACGTGTC 2808787 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAA-CATGTTCGTGGACTTTTGCTTTA 19361 ||| | | || || ||| |||| | || | |||| || || || | || || || Sbjct 2808788 TTTCCACCTGAAGTTGTTACACAACTAGG-TCTAAAGCACGTAAAAGGTATCTTACTGTA 2808846 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---C 19418 ||| ||||||||| ||| ||||| | || || ||| || || | ||| | || | | Sbjct 2808847 TGGTCCACCGGGTACTGGTAAAACTCTCATGGCCAGACAAATTGGAAAAATGCTGAACGC 2808906 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 || |||| || ||||||||||||||| | || ||| |||||||||| ||| | Sbjct 2808907 AAGGGAACCA---AAGATTGTAAATGGTCCTCAGATATTAGATAAATATGTTGGTGAGAG 2808963 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACG 19529 |||| |||| | |||| |||||||| || |||||||| ||| | ||||| Sbjct 2808964 TGAAGCAAATATCAGACGATTGTTTGCCGAAGCTGAAGAGGAAGAGAAACG 2809014 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 19534 GGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAA 19593 |||| ||| ||| | || ||||| ||| | ||||| | ||||| |||||||||||| Sbjct 2809092 GGGCCCAACAGTGGACTTCATATTATTATATTTGATGAGATTGACGCTATCTGTAAGCAA 2809151 Query 19594 AGAGGTT------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCA 19647 ||||| |||||| | || || ||||| ||||| |||||||| || || | Sbjct 2809152 AGAGGAAGTGTAGCTGGTGCTACAGGTGTTCATGATACTGTAGTCAATCAGCTACTCGCT 2809211 Query 19648 AAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTG 19707 ||| | || |||||| | ||| | ||||||||||| || ||||| ||||| ||||||| | Sbjct 2809212 AAAATTGATGGTGTTGAACAATTAAATAATATTTTGGTAATTGGTATGACAAATAGACGG 2809271 Query 19708 GA 19709 || Sbjct 2809272 GA 2809273 >seq30 Length=3281913 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || ||||| || || || || ||||| ||||| ||||| || || || |||||| Sbjct 991162 GAGAAACACTTCATCTCGCACGTATTGGCATTTTTCGCTGCCTCAGATGGCATTGTCAAT 991221 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||||| || |||| |||||||| ||| | |||| || || || || ||| Sbjct 991222 GAGAATTTAGTGGAAAGGTTCAGTCAAGAAGTACAAGTTACAGAGGCTCGTTGCTTCTAT 991281 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || || ||||||||||||||||| || ||||| || |||||| | |||| || || || Sbjct 991282 GGTTTCCAAATTGCCATAGAAAACATCCATTCAGAGATGTACTCTATTCTCATTGACACT 991341 Query 44009 TACATCA 44015 ||| ||| Sbjct 991342 TACGTCA 991348 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || |||||| | || |||||||||| | ||||| ||||| |||||||||||||| | Sbjct 990954 AGATTTGTCATTTTCCCAATTCAATGGCCAGACATCTGGCAGATGTACAAAAAAGCGGAA 991013 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 || ||||| ||||||| ||| ||||| ||| Sbjct 991014 GCTTCATTCTGGACAGTAGAGGAAGTGGAT 991043 >seq51 Length=2226466 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| | || | |||||| || ||||||||||||||| ||| | | |||| Sbjct 127175 ATCCAGATGACAGAAGGATAATAATGAGCGCGTGGAACCCAAGTGACATTTCTCAAATGG 127234 Query 41053 CATTGCCACCTTGTCA-TTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGT 41111 | | |||||||| || | || | ||||||||| || ||||| || |||| || Sbjct 127235 CTCTTCCACCTTGCCACGCTCTTGT-TCAGTTTTATGTAGCAAATGGAAAATTGTCTTGC 127293 Query 41112 CAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTAT 41171 ||| | || |||||| | ||| |||||||| || || || || ||||| || ||| Sbjct 127294 CAACTTTACCAAAGAAGTGCTGATATGGGACTTGGTGTACCATTCAACATTGCCTCTTAC 127353 Query 41172 GCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 | ||||| ||| |||||||||||| || || ||| Sbjct 127354 TCGCTGCTGACGCGTATGATTGCACATGTAACGAAT 127389 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 || ||| | || || |||||| | || |||| ||| | | || || ||| | ||| Sbjct 126633 TTCCCGCTACTGACAACAAAACGCGTCTTCTGGAGAGGAGTAGTTGAGGAGCTGCTCTGG 126692 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 ||||| | ||| | || ||||| || | |||||||| | ||| || |||||||| || Sbjct 126693 TTTATTAGAGGCTCAACAAATGCCAAAGAGTTATCAGAGAAAGGCGTCAACATTTGGGAT 126752 Query 40812 GCGCACAGTTCTAAAACATATTTGT-CTAGCATAGGATTACAAGATAGGGATGAAGGTGA 40870 || | |||| ||| |||| | | | | | | || | | || || ||||| || Sbjct 126753 GCCAATGGTTCACGTGCATTTTTGGACAATCTTGGCCTAACTA-ACAGAGAAGAAGGAGA 126811 Query 40871 TCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATG 40920 | | |||||||| ||||| ||||||| |||||||||||| || || |||| Sbjct 126812 TTTAGGTCCTGTATATGGCTTTCAGTGGCGACATTTTGGCGCCAAGTATG 126861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429624447225