Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4393 140 3e-28 seq26 116 3e-21 seq434 107 2e-18 seq30 100 2e-16 >seq4393 Length=1805 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || ||||| | ||||| ||||| ||||||||||| |||||||| Sbjct 686 TGCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCG 745 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | |||||||| || || || || |||| | ||| || ||||| || | Sbjct 746 ACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAG 805 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||||||| || ||| || ||| | |||| | ||||| | ||| |||| Sbjct 806 GGATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAA 865 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| || || || | |||||| || |||||||| ||||||||||||||| Sbjct 866 CTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCATA 915 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||||||||| ||||| | | ||| | ||||||||||||||||| Sbjct 1402 GTAGATTCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCA 1461 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| | |||||| ||||| || || | ||||||||| || ||| || ||| Sbjct 1462 GCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTTTG 1521 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||||| |||||| |||||||| || || | ||| || || || ||| Sbjct 1522 ACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTT 1581 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| |||||||| Sbjct 1582 TTAACAAAAATTTGCAT 1598 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | ||||| ||||||||||| || ||||| | | ||| | ||||| Sbjct 933 TACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTC 992 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||||||| ||| |||| | |||||| ||||| || || | ||| |||||||| Sbjct 993 GAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTG 1052 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || ||| | | || | ||||| | ||| || ||||||||||| || | ||| Sbjct 1053 AATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTT 1112 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || |||||||| ||||| |||||||| Sbjct 1113 ACCAGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | ||||| |||||||| | || || || || ||||| || |||||| Sbjct 2 TGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGG 61 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||||||||| || || || |||| || || ||||| || || | Sbjct 62 ACAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAG 121 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || |||||||| ||| || || | | |||| | ||||| | || || | Sbjct 122 GAATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGA 181 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||| || |||| ||| || || |||||||| ||||| |||||||| Sbjct 182 CTTCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 >seq26 Length=4002310 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| |||| ||| | ||||| || || ||||| |||||||| Sbjct 1458181 CCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 1458240 Query 27081 AT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || |||| |||||||||||||| ||| |||| | |||||| || ||||| || Sbjct 1458241 AGAGTTCTGC-CGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGG 1458299 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||||||| ||| || ||| | | | || | |||||| | || || || Sbjct 1458300 GATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGAC 1458359 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || |||| || || |||| || || ||||| || ||||| Sbjct 1458360 CTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 |||||||| || | || | || | ||||| || || ||||| || ||||||||||| Sbjct 1457950 TTGCCTCCACGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCT 1458009 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | | | | |||||||| ||||| || || | ||||||||||| || || || Sbjct 1458010 GACAAGGTTCTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGG 1458069 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||| || ||||| ||| || || | | || | || |||| ||||| Sbjct 1458070 GGAATACCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCG 1458129 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | || || | ||| || |||| ||||| ||||| |||||||| Sbjct 1458130 ACCTCCAAGGTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTGCAT 1458179 >seq434 Length=1254451 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | ||||| |||||||| | || || || || ||||| || |||||| Sbjct 844084 TGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGG 844143 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||||||||| || || ||| |||| | ||| || ||||| || | Sbjct 844144 ACAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAG 844203 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||||||| || ||| || ||| | |||| | ||||| | ||||| | Sbjct 844204 GGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCA 844263 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | |||| || || | || || || || || || |||||||| ||||| Sbjct 844264 CCTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 844312 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || || || ||||| | || || |||||||||||||||||||| | |||| | Sbjct 843870 CGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTGCGACCA 843929 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||||||||| || || || |||| || || ||||| || || || | ||| ||||| Sbjct 843930 TCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCTTTG 843989 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || || | | |||| | || || | ||||| || |||| || || Sbjct 843990 TCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATC 844049 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || ||||| || |||||||| ||||| Sbjct 844050 GTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 >seq30 Length=3281913 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || ||||||||| | |||| | |||||||||||||| |||||| ||| Sbjct 593720 CTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAA 593779 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | | | || || ||||| || | ||||| || || |||||| |||| | | | Sbjct 593780 TCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTCT 593839 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||||| | |||||| || || | || |||| || |||||||| |||||||| | Sbjct 593840 CAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACGA 593899 Query 27238 AGATTTGCAT 27247 | |||||||| Sbjct 593900 AAATTTGCAT 593909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424906200954840