Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq30 86.0 7e-12 seq2 84.2 2e-11 >seq30 Length=3281913 Score = 86.0 bits (94), Expect = 7e-12 Identities = 108/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCG 60029 ||||||| ||||| | || ||||| || ||| || ||||| ||||| ||| |||| | Sbjct 991530 CATTTGCCGAACGTGTTATTGCTTTCGC-TGCAGTCGAAGGTATCTTTTTCAGTGGCA-G 991587 Query 60030 TTCTGT-GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 || || |||||||| ||||| |||||||| || ||||||||||| || | ||| || Sbjct 991588 TTTTGCAGCTATTTTTTGGCTGAAAAAGCGAGGACTCATGCCGGGTCTTACCTTCAGTAA 991647 Query 60089 CGAGCTGATTTCCCGGGACGAGG 60111 ||| || || || || || |||| Sbjct 991648 CGAACTCATCTCTCGCGATGAGG 991670 >seq2 Length=6207162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 195/288 (68%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 79128 CTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG-TTACAGGCGTCCTTGTAGCACA 79186 |||||||||||| | |||| ||| || ||| ||| || ||| ||||||||| || Sbjct 5349509 CTTGATGGTGCCCAGATTCTGCTGATTCGACTT-TCGATTGCAGTGGTCCTTGTAAAGCA 5349567 Query 79187 TGTACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAACGCCGTCCCAGATGTCCCGGGCC 79245 |||||||| | || || || |||||| ||| | || |||||| ||| | | || ||| Sbjct 5349568 TGTACGGCATTCCAGTTTCCACCTGAGACTTCAGGATCGCCGT-CCACAGCTTCCTGGCG 5349626 Query 79246 CGGACAACCTTCTTG----TACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAA 79301 || ||||||| | ||| | || | ||||| | |||||| || ||| Sbjct 5349627 TCGATTTGCTTCTTGAATTTGCCGTCACTCT----CGTACTTTTCGTACAATCGGTCGAA 5349682 Query 79302 AGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTC 79361 | | | || ||||||| ||| || || |||| ||||||||||| ||| ||| | Sbjct 5349683 ATCGTTTCCCCAGACATCATGCAATCCGGGACACTGTTGCGGGCACATGAGGCTCCACTT 5349742 Query 79362 CTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409 ||| | | |||| ||| |||||| | || |||||||| || || Sbjct 5349743 GCCGTTGTCCAAAACCCTCTTCATGAACAAATCTGGGATCCAAAGAGC 5349790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548487466030800