Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4393 138 7e-28 seq434 127 1e-24 seq26 113 3e-20 seq30 91.5 9e-14 >seq4393 Length=1805 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| |||||||| |||||||| || ||| ||||||||||||||| || || || Sbjct 1143 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGA 1202 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| ||| |||||||||| || || |||||||| || || | |||||| || || || Sbjct 1203 TAGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGG 1262 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | || || || ||| ||| ||| | || ||| | |||||| || | ||| | Sbjct 1263 AATACCTTCTTTATCT-TGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAA 1321 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| || || ||||| || || | || || ||||| ||||||||| Sbjct 1322 CTTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCATG 1371 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| |||||||| |||||||| || ||| |||||| ||||||||||| || || Sbjct 3 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 62 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || | ||||| || || || || ||||| || | || |||||||| || || Sbjct 63 CAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGG 122 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| || || || ||| ||| | || ||| | ||||||||| ||| | Sbjct 123 AATTCCTTCTTTATCCTGGAT-TTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGA 181 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || ||||||||||| | ||||| |||||||| |||||| Sbjct 182 CTTCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCATG 231 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | |||||| || || |||||||| ||||| ||||| Sbjct 1371 GCCACCACGAAGTCGAAGCACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGTCTGA 1430 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||| ||| | ||||| || |||||||| || || || |||||||| || || || || Sbjct 1431 AAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGG 1490 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||||| |||||| ||| ||||| ||| || | ||| |||||| | || | Sbjct 1491 GATACCCTCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATCGTGTCTGAGGCTTCGA 1549 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | || || ||||| || |||| ||||| |||||||| |||||| Sbjct 1550 CTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAACAAAAATTTGCATG 1599 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||||||| || ||||||||||| ||| || |||||||| || || || Sbjct 231 GCCTCCTCGAAGACGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGA 290 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | ||||| ||||| || || ||||| || ||||| || || || || || Sbjct 291 CAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGG 350 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| ||| ||| | || ||| | ||| || ||| | ||| | Sbjct 351 TATGCCTTCTTTGTCT-TGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGA 409 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | |||||| ||||| || |||| ||||| || || |||||||| Sbjct 410 CTTCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCAT 458 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | |||||| || ||| |||||||||||||| |||||| Sbjct 916 CCACCACGAAGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAA 975 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||| | ||||| || |||||||| || || || |||||||| || || || || Sbjct 976 AGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGG 1035 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || || || ||| ||| | ||| || | ||| ||||| | ||| || Sbjct 1036 ATACCTTCTTTATC-CTGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGAC 1094 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | || || |||||||| || | ||||| |||||||| |||||| Sbjct 1095 TTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCATG 1143 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| |||||| || || | ||| || || ||| ||||||||||| || || || Sbjct 687 GCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGA 746 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | ||||| ||||| || || ||||| || ||||| || || || || || Sbjct 747 CAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGG 806 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||||| ||||| ||| ||||| ||| || | ||||||||| | ||| | Sbjct 807 GATACCCTCTTTGTCCTGGAT-TTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAA 865 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 866 CTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 100 bits (110), Expect = 2e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| |||||||| |||||||| || || ||||||||||||||| || || || Sbjct 1599 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGA 1658 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || | |||||||| || || || || || || |||||||| || || || || Sbjct 1659 CAGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGG 1718 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCC 34656 | || || |||||| ||| ||| | || ||| | |||||| || ||| ||| Sbjct 1719 GATACCTTCTTTGTCT-TGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCT-TCC 1776 Query 34657 ACTTCCACGGTTATCGTTTTACCGGT 34682 || || | ||| ||||| || || || Sbjct 1777 ACCTCTAAGGTGATCGTCTTTCCAGT 1802 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | ||| ||||| |||||| |||||||||||||| || Sbjct 460 CCACCACGAAGTCGGAGTACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGAC 519 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || || || || ||||| || || || |||||||| || || || || Sbjct 520 AGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGG 579 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||| | || || | |||||| || ||| || | Sbjct 580 ATACCTTCTTTGTCT-TGAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCT-TCAA 637 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || ||||| || || | || || ||||| ||||||||| Sbjct 638 CCTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGACAAAGATCTGCATG 687 >seq434 Length=1254451 Score = 127 bits (140), Expect = 1e-24 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| |||||||| |||||||| || ||| |||||| ||||||||||| || || Sbjct 844085 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 844144 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || | ||||| || || || || || || || ||||| || || || || || Sbjct 844145 CAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGG 844204 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCC 34656 | ||||| |||||| ||| ||||| ||| || | ||| ||||| ||| ||| Sbjct 844205 GATACCCTCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATCGTGTCAGAAGCT-TCC 844262 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | ||| ||||| || || || | || || ||||| ||||||||||| Sbjct 844263 ACCTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 844315 Score = 107 bits (118), Expect = 1e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || || || ||||| || ||| ||| |||||||| || || |||||| Sbjct 843858 CCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAA 843917 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || || || || ||||| || | || |||||||| || || Sbjct 843918 AGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGG 843977 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||| | || ||| | |||||| || ||| |||| Sbjct 843978 ATACCTTCTTTGTCT-TGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCT-TCCA 844035 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| ||||| || || || | || || ||||| ||||||||| Sbjct 844036 CCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATG 844085 >seq26 Length=4002310 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| ||| ||||| ||||| |||||||| || || ||||| |||| Sbjct 1458190 AGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTG 1458249 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || |||||||| || || || |||||||| |||||||| || | ||||| Sbjct 1458250 CCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGGATACCCTCT 1458309 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| ||| | ||| ||| | ||| ||||| ||| || || | ||| Sbjct 1458310 TTATCCTGGAT-TTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGACCTCTAGGGT 1458368 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || |||||||||||||| Sbjct 1458369 GATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Score = 91.5 bits (100), Expect = 9e-14 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||| ||||| || || || ||||| |||||||||||| Sbjct 1471300 CCTCCACGAAGACGGAGAACCAGGTGGAGTGTTGATTCTTTCTGAATATTATAATCTGAA 1471359 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| ||||| || || || || || | ||| || ||||| || || Sbjct 1471360 AGGGTTCTTCCGTCTTCCAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCTGGAGGA 1471419 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCT 34647 | ||||| |||||| ||| ||||| ||| ||| | |||||| ||| Sbjct 1471420 ATGCCCTCTTTGTCT-TGAATTTTTGCTTTTACGTTTTCAATTGTATCT 1471467 >seq30 Length=3281913 Score = 91.5 bits (100), Expect = 9e-14 Identities = 140/193 (73%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| || || ||||| || || | ||||| || ||||| ||||| || Sbjct 593719 CCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAA 593778 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGA 34634 || || | || |||||||| || | |||||||||| |||| ||| || | || ||| Sbjct 593779 ATCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGT-ATC-TTGGCCTTCACGT 593836 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||||||||| | || || |||| ||| || || ||||| || | ||||||| Sbjct 593837 TCTCAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCA 593896 Query 34694 CAAAAATCTGCAT 34706 | ||||| ||||| Sbjct 593897 CGAAAATTTGCAT 593909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314708714248685